Locus 9885

Sequence ID 3R_DroMel_CAF1
Location 26,384,808 – 26,384,901
Length 93
Max. P 0.974085
window15770

overview

Window 0

Location 26,384,808 – 26,384,901
Length 93
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 76.65
Mean single sequence MFE -23.26
Consensus MFE -16.56
Energy contribution -16.76
Covariance contribution 0.20
Combinations/Pair 1.18
Mean z-score -2.04
Structure conservation index 0.71
SVM decision value 1.72
SVM RNA-class probability 0.974085
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26384808 93 - 27905053
AUCACGCAGUCGUU----------UGGUUUUAUUUACUACUUUUUUA--------CUGCACAACUGCGACUGAAAUAAUAGUGCUGUUAAGUUG--GUUUAAUGGCUUGUGAC
.((((.((((((((----------((((..((.............))--------..)).)))..)))))))..........(((((((((...--.)))))))))..)))). ( -20.62)
>DroSec_CAF1 114143 95 - 1
AUCACGUAGUCGUUUUAGUCGUAGUGGUUUUAUUUACUACUUUUUUA--------CU--------GCGACUGAAAUAAUAGUGCUGUUAAGCAG--GCUUAAUGGCUUGUGAC
.(((((..((..(((((((((((((((.................)))--------))--------))))))))))..))...(((((((((...--.))))))))).))))). ( -32.43)
>DroSim_CAF1 111760 93 - 1
AUCACGUAGUCGUU----------UGGUUUUAUUUACUACUUUUUUA--------CUGCACAACUGCGACUGAAAUAAUAGUGCUGUUAAGCAG--GCUUAAUGGCUUGUGAC
.(((((.(((((((----------.(((((.....((((...(((((--------.((((....))))..)))))...))))(((....)))))--))).)))))))))))). ( -23.20)
>DroEre_CAF1 118357 71 - 1
AUCACGUAGUCGUU----------UCGUUUUAUUUACUA------------------------------CUGAAAUAAUAGUGCUGUUAGGCAA--GUUUAAUGGCAUGUGAC
.(((((((((....----------...........))))------------------------------)..........(((((((((((...--.))))))))))))))). ( -16.26)
>DroYak_CAF1 112730 103 - 1
AUCACGUAGUCGUU----------UGGUUUUAUUUACUACGUUCUUACUGUUAUACUGCACAACUGCGACCGAAAUAAUAGUGCUGUUAGGCAAGAGUUUAAUGGCAUGUGAC
.((((...((((((----------((((..(((..((...((....)).)).)))..)).)))..)))))..........((((((((((((....)))))))))))))))). ( -23.80)
>consensus
AUCACGUAGUCGUU__________UGGUUUUAUUUACUACUUUUUUA________CUGCACAACUGCGACUGAAAUAAUAGUGCUGUUAAGCAG__GUUUAAUGGCUUGUGAC
.((((((((((((....................................................)))))))..........((((((((((....)))))))))).))))). (-16.56 = -16.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:13 2006