| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,364,306 – 26,364,422 |
| Length | 116 |
| Max. P | 0.665051 |
| Location | 26,364,306 – 26,364,422 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 90.55 |
| Mean single sequence MFE | -36.80 |
| Consensus MFE | -29.04 |
| Energy contribution | -30.16 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26364306 116 - 27905053 AUCCAUUGUCAGGGCCAAGUGGCCGAUUCUGCAGGAGGCCUCUUAACUCGAACUUAUGGCCACUUGGCCGCAAUUAAAGCCGGUGCCGCUUUUCGUUUCAAUAUUAAUGGGCGCAU .(((((((....(((((((((((((......)..(((.........)))........))))))))))))(.(((.(((((.(....))))))..))).).....)))))))..... ( -37.40) >DroSec_CAF1 86176 115 - 1 AUCCAUUGUUAGGGCCAAGUGGGCGAUUCUGCAGGAGGCCUCUUAACUCGGACUUAUGGCCACUUGGCCGCAAUUAAAGCCGGUGCCGCUU-UCGUUUGAAUAUUAAUGGGCGCAU .(((((((....((((((((((.((..((((.((((....))))....))))....)).)))))))))).(((..(((((.(....)))))-)...))).....)))))))..... ( -36.50) >DroSim_CAF1 91546 115 - 1 AUCCAUUGUCAGGGCCAAGUGGGCGAUUCUGCAGGAGGCCUCUUAACUCGGACUUAUGGCCACUUGGCCGCAAUUAAAGCCGGUGCCGCUU-UCGUUUGAAUAUUAAUGGGCGCAU .(((((((....((((((((((.((..((((.((((....))))....))))....)).)))))))))).(((..(((((.(....)))))-)...))).....)))))))..... ( -36.50) >DroEre_CAF1 93631 104 - 1 AUCCAUUGUCAGGGCCAAGUGGCCGAUUC-----------UCUUAACUCGGACUUAUGGCCACUUGGCCGCAAUUAAUGCCAGUGCCGCUU-UCUUUUGAAUAUUAAUGGGCGCAU ...(((((...((((((((((((((....-----------(((......)))....))))))))))))).)...)))))...(((((.(.(-((....))).......)))))).. ( -36.70) >DroYak_CAF1 90965 115 - 1 AUCCAUUGUCAGGGCCAAGUGGUCGAUUCUUUAGGAGGUCUCUUAACUCGGACUUAUGGCCACUUGGACGCAAUUAAAGCCAGUGCCCGUU-UCUUUUGCAUAUUAAUGGGCGCAU ...........(.((((((((((((..(((((((((....))))))...)))....))))))))))).).)...........(((((((((-.............))))))))).. ( -36.92) >consensus AUCCAUUGUCAGGGCCAAGUGGCCGAUUCUGCAGGAGGCCUCUUAACUCGGACUUAUGGCCACUUGGCCGCAAUUAAAGCCGGUGCCGCUU_UCGUUUGAAUAUUAAUGGGCGCAU ....(((((...(((((((((((((.........(((.........))).......))))))))))))))))))........(((((......................))))).. (-29.04 = -30.16 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:10 2006