Locus 9881

Sequence ID 3R_DroMel_CAF1
Location 26,357,102 – 26,357,212
Length 110
Max. P 0.609240
window15765

overview

Window 5

Location 26,357,102 – 26,357,212
Length 110
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 82.86
Mean single sequence MFE -39.22
Consensus MFE -27.44
Energy contribution -28.17
Covariance contribution 0.72
Combinations/Pair 1.17
Mean z-score -1.77
Structure conservation index 0.70
SVM decision value 0.15
SVM RNA-class probability 0.609240
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26357102 110 - 27905053
-----AUUUUUUUUCC---AAUAAGCCCAGACAUCUCAUCGAUACCCUCUGUGGGCAAACAACUCUGAAUCGGGUGGAAUACAUUGGGCUGAUCCGGCUGGCCAUUUGGCCGGGCGGC
-----...........---....(((((((..((..(((((((.(((.....)))....((....)).))).))))..))...)))))))...(((.((((((....)))))).))). ( -37.30)
>DroSec_CAF1 79137 108 - 1
-----AUAU--UUUCC---AAUAAGCCCAGACAUCCCACCGAUACCCUCUGUGGGAAAACAACUCUGAAUCGGGUGAAAUACAUUGGGCUGAUCCGGCUGGCCAUUUGGCCGGGCGGC
-----....--.....---....(((((((...((((((.((.....)).)))))).....((((......))))........)))))))...(((.((((((....)))))).))). ( -42.20)
>DroSim_CAF1 84391 109 - 1
-----GUGU-CUUUCC---AAUAUGCCCAGACAUCCCAUCGAUACCCUCUGUGGGCAAACAACUCUGAAUCGGGUGGAAUACAUUGGGCUGAUCCGGCUGGCCAUUUGGCCGGGCGGC
-----....-......---.....((((((..((.((((((((.(((.....)))....((....)).))).))))).))...))))))....(((.((((((....)))))).))). ( -37.00)
>DroEre_CAF1 86671 110 - 1
-----UUUCGUUGUCC---AACAAGCCCAGACAUCCCUUCGAUACCCUCUGUGCGCAAACAACUCUGAAUCGGGUGGAAUAUAUUGGGCUGAUCCGGCUGGCCAUUUGGCCGUGCGGC
-----....(((....---))).(((((((...(((.((((((......(((......))).......)))))).))).....)))))))...(((.((((((....))))).)))). ( -31.12)
>DroYak_CAF1 83525 110 - 1
-----UUUUGCUGUCC---AAUAAGCCCAGACCUGCCAUCGAUACCCUCUGUGGGCAAACAACUCUGAAUCGAGCGGAAUAUAUUGGGCUGAUCCGGCUGGCCAUUUGGCCGGGCGGC
-----....(((((((---....(((((((.....((.(((((.(((.....)))....((....)).)))))..))......))))))).........((((....))))))))))) ( -40.70)
>DroAna_CAF1 99087 115 - 1
UACUAAUAG--CUUCCAUGAAUAUACCCAUCCAUGCCAU-GGCACCCUGGGAAAGCCAGUGUGUCUGAAUCGGUGGGAAUACAUUGGGCUGAUCUGGCUGGCCAUUUGGCCGGUCGGC
......(((--(..(((....(((.((((((.((..((.-(((((.((((.....)))).))))))).)).)))))).)))...)))))))..((((((((((....)))))))))). ( -47.00)
>consensus
_____AUUU__UUUCC___AAUAAGCCCAGACAUCCCAUCGAUACCCUCUGUGGGCAAACAACUCUGAAUCGGGUGGAAUACAUUGGGCUGAUCCGGCUGGCCAUUUGGCCGGGCGGC
.......................(((((((..............(((.....)))......((((......))))........)))))))...(((.((((((....)))))).))). (-27.44 = -28.17 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:08 2006