Locus 9879

Sequence ID 3R_DroMel_CAF1
Location 26,351,903 – 26,352,001
Length 98
Max. P 0.660806
window15761

overview

Window 1

Location 26,351,903 – 26,352,001
Length 98
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 75.83
Mean single sequence MFE -18.05
Consensus MFE -13.32
Energy contribution -13.93
Covariance contribution 0.61
Combinations/Pair 1.07
Mean z-score -0.92
Structure conservation index 0.74
SVM decision value 0.27
SVM RNA-class probability 0.660806
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26351903 98 - 27905053
CUUCUACGGUCUGCUCCAUUGCGAUGAGAACUCAUCGGUAAG--UUGCCA------UCCAAUCCAAUCGUGCCACCACUUUUUAUAUCUAUGU-----AUCUGACCACCCA----
.......((((.((......))(((((....)))))((((.(--(((...------.......))))..))))....................-----....)))).....---- ( -17.70)
>DroVir_CAF1 74379 104 - 1
CUUUUAUGCUCUGCUCCAUUGCGAUGAGACCUCAUCGGUAAGAGUCGAAAUUUUAAUUAAAAGCAAUUAUUAGCCAAGUUCUUA-----AU-G-----AUCUGAGCAGCAAAUCC
......((((..((((.....((((((....)))))).((((((.(....(..(((((......)))))..).....)))))))-----..-.-----....))))))))..... ( -19.90)
>DroSec_CAF1 73953 94 - 1
CUUCUACGGUCUGCUCCAUUGCGAUGAGAACUCAUCGGUAAG--UUGCCA--------CUAUCCUAUCGUGUCACCACAUUC--UAUCUAUGU-----AUCUGACCACCCA----
.......((((.((......))(((((....)))))(((...--..))).--------..........(((....)))....--.........-----....)))).....---- ( -17.40)
>DroSim_CAF1 79180 94 - 1
CUUCUACGGUCUGCUCCAUUGCGAUGAGAACUCAUCGGUAAG--UUGCCA--------CUAUCCUAUCGUGCCACCAUUUUC--CAUCUAUGU-----AUCUGACCACCCA----
.......((((.((......))(((((....)))))((.(((--(((.((--------(.........))).))..)))).)--)........-----....)))).....---- ( -17.70)
>DroEre_CAF1 81371 94 - 1
CUUCUACGGUCUGCUCCACUGCGAUGAGAACUCAUCGGUAAG--UUGCCA--------CCAACCUAUCCUGCCACUAUGUUG--UAUCUAUGU-----AUCUGCGCACCCC----
.......(((.(((.....((((((((....)))))((((.(--(((...--------.)))).))))..............--.......))-----)...))).)))..---- ( -17.10)
>DroYak_CAF1 78143 99 - 1
CUUCUACGGUCUGCUCCAUUGCGAUGAGAACUCAUCGGUAAG--UUGCCA--------CUAUCCUAUUCUGCCACUAUUUUG--UAGCUAUAUAUAAUAUUUGACCAUCCA----
.......((((.((......))(((((....)))))(((...--..))).--------.(((..(((...((.((......)--).))...)))..)))...)))).....---- ( -18.50)
>consensus
CUUCUACGGUCUGCUCCAUUGCGAUGAGAACUCAUCGGUAAG__UUGCCA________CUAUCCUAUCGUGCCACCAUUUUC__UAUCUAUGU_____AUCUGACCACCCA____
.......((((.((......))(((((....)))))((((.....)))).....................................................))))......... (-13.32 = -13.93 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:05 2006