Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,346,562 – 26,346,656 |
Length | 94 |
Max. P | 0.898822 |
Location | 26,346,562 – 26,346,656 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 83.30 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -17.12 |
Energy contribution | -17.57 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.38 |
Structure conservation index | 0.82 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26346562 94 + 27905053 UUAGGGCCCUGUUUACAUGAUAAUCAAUUAUUUCACUACCCACUGAUUAUGUGGGUCAGCAAACAAGGUUCAAAUCCCCCC-CCCCCCCCCUCUU ...(((((.(((((..(((((.....)))))....((((((((.......)))))).)).))))).)))))..........-............. ( -19.60) >DroSec_CAF1 68565 92 + 1 UUAGGGCCCUGUUUACAUGAUAAUCAAUUAUUUCACUACCCACUGAUUAUGUGGGUCAGCAAACAAGGUUCAAAUCCUACC-CCCUGCCC--CUC ...((((..(((((..(((((.....)))))....((((((((.......)))))).)).)))))(((.......)))...-....))))--... ( -20.10) >DroSim_CAF1 73828 93 + 1 UUAGGGCCCUGUUUACAUGAUAAUCAAUUAUUUCACUACCCACUGAUUAUGUGGGUCAGCAAACAAGGUUCAAAUCCCGCCCCCCUGCCC--AUC ...((((..(((((..(((((.....)))))....((((((((.......)))))).)).))))).((........))........))))--... ( -20.10) >DroEre_CAF1 76341 84 + 1 UUGGGGCGCUGUUUACAUGAUAAUCAAUUAUUUCACUAGCCACUGAUUAUGUGGGUCAGCAAACAAGGCUCGAGUCUCC---------CA--UUC .((((..((((((((((((((......(((......)))......)))))))))).)))).....((((....))))))---------))--... ( -20.80) >DroYak_CAF1 72707 84 + 1 UUGGGGCCCUGUUUACAUGAUAAUCAAUUAUUUCACUACCCACUGAUUAUGUGGGUCAGCAAACAAGGUGCAAAUCACC---------CU--UUC ..((((((((((((..(((((.....)))))....((((((((.......)))))).)).)))).))).))......))---------).--... ( -18.90) >DroAna_CAF1 87904 80 + 1 UUCGGGCCCUGUUUACAUGAUAAUCAAUUAUUUCACUAGCCACUGAUUAUGUGGGUCAGCAAACAGGGCUCACACUCU--------------UA- ...(((((((((((...((((......(((......)))((((.......))))))))..))))))))))).......--------------..- ( -25.40) >consensus UUAGGGCCCUGUUUACAUGAUAAUCAAUUAUUUCACUACCCACUGAUUAUGUGGGUCAGCAAACAAGGUUCAAAUCCCC_________CC__UUC ...(((((.(((((..(((((.....)))))....((((((((.......)))))).)).))))).)))))........................ (-17.12 = -17.57 + 0.45)
Location | 26,346,562 – 26,346,656 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 83.30 |
Mean single sequence MFE | -25.65 |
Consensus MFE | -20.16 |
Energy contribution | -20.52 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -2.24 |
Structure conservation index | 0.79 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26346562 94 - 27905053 AAGAGGGGGGGGG-GGGGGGAUUUGAACCUUGUUUGCUGACCCACAUAAUCAGUGGGUAGUGAAAUAAUUGAUUAUCAUGUAAACAGGGCCCUAA .............-..((((.......((((((((((..((((((.......)))))).(((((((.....))).)))))))))))))))))).. ( -26.71) >DroSec_CAF1 68565 92 - 1 GAG--GGGCAGGG-GGUAGGAUUUGAACCUUGUUUGCUGACCCACAUAAUCAGUGGGUAGUGAAAUAAUUGAUUAUCAUGUAAACAGGGCCCUAA .((--((.((((.-.......))))..((((((((((..((((((.......)))))).(((((((.....))).)))))))))))))))))).. ( -28.90) >DroSim_CAF1 73828 93 - 1 GAU--GGGCAGGGGGGCGGGAUUUGAACCUUGUUUGCUGACCCACAUAAUCAGUGGGUAGUGAAAUAAUUGAUUAUCAUGUAAACAGGGCCCUAA ...--.......(((((((........))((((((((..((((((.......)))))).(((((((.....))).)))))))))))).))))).. ( -28.40) >DroEre_CAF1 76341 84 - 1 GAA--UG---------GGAGACUCGAGCCUUGUUUGCUGACCCACAUAAUCAGUGGCUAGUGAAAUAAUUGAUUAUCAUGUAAACAGCGCCCCAA ...--((---------((........((.(((((((((((.((((.......)))).((((.((....)).))))))).)))))))).)))))). ( -19.00) >DroYak_CAF1 72707 84 - 1 GAA--AG---------GGUGAUUUGCACCUUGUUUGCUGACCCACAUAAUCAGUGGGUAGUGAAAUAAUUGAUUAUCAUGUAAACAGGGCCCCAA ...--.(---------((((.....))((((((((((..((((((.......)))))).(((((((.....))).)))))))))))))).))).. ( -25.70) >DroAna_CAF1 87904 80 - 1 -UA--------------AGAGUGUGAGCCCUGUUUGCUGACCCACAUAAUCAGUGGCUAGUGAAAUAAUUGAUUAUCAUGUAAACAGGGCCCGAA -..--------------......((.((((((((((((((.((((.......)))).((((.((....)).))))))).))))))))))).)).. ( -25.20) >consensus GAA__GG_________GGGGAUUUGAACCUUGUUUGCUGACCCACAUAAUCAGUGGGUAGUGAAAUAAUUGAUUAUCAUGUAAACAGGGCCCUAA ...........................((((((((((..((((((.......)))))).(((((((.....))).))))))))))))))...... (-20.16 = -20.52 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:04 2006