| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,332,634 – 26,332,749 |
| Length | 115 |
| Max. P | 0.855589 |
| Location | 26,332,634 – 26,332,749 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.30 |
| Mean single sequence MFE | -34.28 |
| Consensus MFE | -18.11 |
| Energy contribution | -19.20 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.855589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26332634 115 + 27905053 ACUGCAACUCGCUAUUAAGAAUUGGCCGGAAAAGGUCAGUCUGCAAAGAGCCCUUUCUCGGCUAAAGAUGAAUAUUCGCAUUGGCAAGGAGCCAGCGGAAAAGGUAUACGGU-----AAU ((((..(((...((((.....(((((((..(((((.(..(((....)))).)))))..))))))).....))))(((((..((((.....)))))))))...)))...))))-----... ( -31.80) >DroPse_CAF1 50988 108 + 1 A---------GCCCUAAAGAGGCAUCCAAAGAACCACAACUUGAAGCGGGCUCUCACUAGGCUGGAAAUGAGCCAUCGCAUUGGGGAAGAGCCCCAGGAACAGGUC---AGUGGAGGAAC .---------((((....).)))..........((((.(((((..((((((((...(......).....)))))..))).((((((.....))))))...))))).---.))))...... ( -34.60) >DroSec_CAF1 54789 112 + 1 GCUGCAACUCGCUAUUAGGAAUUGGCCGGAAAAGGUCAGUCUGCAAAGAGCCCUUUCUCGGCUAAAGAUUAAUAUUCGUAUUGGCAAGGAGUCAGCGAAAAAGGUA---AGA-----AAU (((((..((.((((.((.((((((((((..(((((.(..(((....)))).)))))..)))))).........)))).)).)))).))..).))))..........---...-----... ( -33.50) >DroSim_CAF1 60036 112 + 1 GCUGCAACUCGCUAUUAGGAAUUGGCCGGAAAAGGUCAGUCUGCAAAGAGCCCUUUCUCGGCUAAAGAUUAAUAUUCGUAUUGGCAAGGAGUUAGCGAAAAAGGUA---AGA-----AAU (((((..((.((((.((.((((((((((..(((((.(..(((....)))).)))))..)))))).........)))).)).)))).))..).))))..........---...-----... ( -31.50) >DroEre_CAF1 62320 112 + 1 GCUGCAACUGGCCAUCAAGAAUUGGCCCGAAGAGGUCAGUCUGCAAAGAGCCCACUCGCGGCUAAAGAUGAAUAUUCGCAUUGGCAAGGAGCCCGCCAAAACGGUG---AGU-----AGU (((((..(.(((((........))))).)..(((.....(((....))).....))))))))..........(((((((.(((((.........)))))....)))---)))-----).. ( -34.40) >DroYak_CAF1 58405 112 + 1 GCUGCGACUGGCUAUAAAGAAUUGGCCGGAAAGGGUCAGUCUGCAAAGAGCCCUCUCUCGGCUAAAGGUGAAUAUUCGCAUUGGGAAGGAGCCAGCGAAAGCGGUG---AGU-----AAU (((((..((((((........(((((((((.(((((...(((....)))))))).)).)))))))..((((....))))..........)))))).....))))).---...-----... ( -39.90) >consensus GCUGCAACUCGCUAUUAAGAAUUGGCCGGAAAAGGUCAGUCUGCAAAGAGCCCUCUCUCGGCUAAAGAUGAAUAUUCGCAUUGGCAAGGAGCCAGCGAAAAAGGUA___AGU_____AAU ..........(((........(((((((..(((((....(((....)))..)))))..))))))).........(((((..((((.....)))))))))...)))............... (-18.11 = -19.20 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:01 2006