| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,330,450 – 26,330,563 |
| Length | 113 |
| Max. P | 0.602557 |
| Location | 26,330,450 – 26,330,563 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.17 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -16.83 |
| Energy contribution | -16.84 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26330450 113 + 27905053 CUAUCUGAGGCAGUUCCACUUGCUUUCUGGGAGCAAAACUUCGCUCCCUAGCCAAUUGGCCUUCGUACAAUAUCUUGUUCUUGAGAGCCUCCUCAUGAUCAGGCUUCUUAUCC ((((((((((...........(((....((((((........)))))).))).....(((.((((.((((....))))...)))).))).))))).))).))........... ( -31.00) >DroSec_CAF1 52624 108 + 1 -----UGAGGCAGUUCCGCUUGCUCUCUAGGAACAAAACUUCGCUCCCUAGCCAAUUGGCCUUCGUACAGUAUCUUGUUCUUGAGAGCAUCCUCAUGAUCAGGCUUCUUAUCC -----.(((((...((.(..(((((((.((((((((.(((..((......(((....)))....))..)))...)))))))))))))))..)....))....)))))...... ( -29.70) >DroSim_CAF1 57870 108 + 1 -----UGAGGCAGUUCCGCUUGCUCUCUAGGAACAAAACUUCGCUCCCUAGCCAAUUGGCCUUCGUACAGUAUCUUGUUCUUGAGAGCAUCCUCAUGAUCAGGCUUCUUGUCC -----.(((((...((.(..(((((((.((((((((.(((..((......(((....)))....))..)))...)))))))))))))))..)....))....)))))...... ( -29.70) >DroEre_CAF1 60176 113 + 1 CUGUUUGAGGCGGAUCCACCUGCUUUCUGGGAAUAACAUUUCGCGCCUUAGCCAAUUGGCCUUCGUACAGUACCUUGUUCUUGAGAGCCUCCUCAUGAUCAGGCUUCUUAUCC ((((.(((((((......((........))(((......))).)))))))(((....)))......))))...((((.((.((((......)))).)).)))).......... ( -27.70) >DroYak_CAF1 56242 113 + 1 CUACAUGAGGCAGAUCCACUUGCUUUCUGGGCGUAAAACUGCGCUCCUUAGCCAAUUGGCCUUCGUAGAGUAACUUGUUCCUGUGAGCCUCCUCAUGAUCCGGCUUUUUAUCC ...(((((((.((......((((((((.(((((((....)))))))....(((....)))....).)))))))...((((....)))))))))))))................ ( -30.20) >DroAna_CAF1 70441 113 + 1 UUGGCUCAGACAAAGCCGAUGGUUUUCUGGGUCUAUGAUUACGCUCUUUAGCCAAUAUAGCUUCAUAAGCAACUUUAUUCCUCAAAGCCUCUUCGUGGUCAGAUUCCUUUUCC ..((((((((..(((((...)))))))))))))..((((((((((....(((.......))).....)))..((((.......)))).......)))))))............ ( -24.50) >consensus CU___UGAGGCAGAUCCACUUGCUUUCUGGGAACAAAACUUCGCUCCCUAGCCAAUUGGCCUUCGUACAGUAUCUUGUUCUUGAGAGCCUCCUCAUGAUCAGGCUUCUUAUCC ......(((((((.....)).((((((.((((((((..............(((....)))..............))))))))))))))..............)))))...... (-16.83 = -16.84 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:00 2006