| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,321,822 – 26,321,913 |
| Length | 91 |
| Max. P | 0.529659 |
| Location | 26,321,822 – 26,321,913 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 81.35 |
| Mean single sequence MFE | -25.41 |
| Consensus MFE | -16.45 |
| Energy contribution | -17.95 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26321822 91 - 27905053 C--UUGCCGCCAACUGAAAA-CAGUUCCUAACGAUUCGCGGCUGGAACAACAAGCAAAAAGCGAUCCGCGUUCUGAAAACCGGUGGCGUUUUAU .--..((((((.((((....-))))((..((((..((((.((((......).))).....))))....))))..)).....))))))....... ( -26.70) >DroSec_CAF1 43948 91 - 1 U--UUGCCGCCAACUGAAAA-CAGUUCCUAACGAAUCGCGGCUGGAACAACAAGCAAAGCGCGAUCCGCGUUCUGAAAGCUGGUGGCGUUUUAU .--..(((((((.((.....-..(((((...((.....))...)))))......((.((((((...)))))).))..)).)))))))....... ( -30.50) >DroSim_CAF1 48595 91 - 1 U--UUGCCGCCAACUGAAAA-CAGUUCCUAACGAAUCGCGGCUGGAACAACAAGCUAAGCGCGAUCCGCGUUCUGAAAGCCGGUGGCGUUUUAU .--..(((((((((((....-))))).............(((((((((.....((...))(((...))))))))...))))))))))....... ( -29.00) >DroEre_CAF1 51618 71 - 1 ------------ACUGAAAA-CAGUUCCUAACGAAUCGCGGCUGGAACAACAAGCAAACCGCGAUCUGCGUUCUGAAAGCCGGU---------- ------------.(((....-)))(((..((((.(((((((.................)))))))...))))..))).......---------- ( -15.03) >DroYak_CAF1 47432 93 - 1 UUUUUGCCGCCAACUGAAAA-CAGUUCCUAACGAAUCGCGGCUGGAACAACAAGCAAACCGCGUUCCGCGUUCUAAAAGCCGCUGGCGUUUUAU .......(((((((((....-)))))...........(((((((((((.....((.....))(.....))))))...)))))).))))...... ( -26.50) >DroAna_CAF1 58055 90 - 1 U--UUGCCGUCGACUCAAAAUCAGUUUCUGACGAAGCGCCGGUGGAACAGCAAGCAAAUUGCUAGCCGCGAUCUGAAAGCCGGUAACAU--UAU .--((((((.(...(((..(((.(((((....)))))....((((...(((((.....)))))..))))))).)))..).))))))...--... ( -24.70) >consensus U__UUGCCGCCAACUGAAAA_CAGUUCCUAACGAAUCGCGGCUGGAACAACAAGCAAACCGCGAUCCGCGUUCUGAAAGCCGGUGGCGUUUUAU ....(((((((............(((((...((.....))...)))))......((.(((((.....))))).))......)))))))...... (-16.45 = -17.95 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:59 2006