Locus 9872

Sequence ID 3R_DroMel_CAF1
Location 26,317,874 – 26,317,976
Length 102
Max. P 0.617533
window15751

overview

Window 1

Location 26,317,874 – 26,317,976
Length 102
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.07
Mean single sequence MFE -30.02
Consensus MFE -21.79
Energy contribution -21.15
Covariance contribution -0.64
Combinations/Pair 1.20
Mean z-score -1.22
Structure conservation index 0.73
SVM decision value 0.17
SVM RNA-class probability 0.617533
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26317874 102 - 27905053
UGCAUCCCUCUGGAGACCAGGAUUUUCGAACGAAACACGCCGCUUGUCCUGUUCUUCAGGGCAGCAAAUGGAGUAAGUAAAUCUUUUUAUACCUUGCUACUA--
.......(((((((((.((((((...((..((.....)).))...)))))).))))))))).(((((..((.(((((........))))).)))))))....-- ( -29.60)
>DroSec_CAF1 39960 101 - 1
UACAUCCCUCUGGAGACCAGGAUUUUCGAACCAAACACGCCGCUUGUCCUGUUCUUCAGGGCAGCAAAUGGAGUAAGUGCAUCUU-UUAGACCGUGCAGCUG--
.......(((((((((.((((((...((............))...)))))).)))))))))((((..((((..((((.......)-)))..))))...))))-- ( -29.80)
>DroSim_CAF1 44613 101 - 1
UACAUCCCUCUGGAGACCAGGAUUUUCGAACCAAACACGCUGCUUGUCCUGUUCUGCAGGGCAGCAAAUGGAGUGAGUGAAUCUU-UUAGACCUUGCAGCUA--
........(((((...))))).................(((((((((((((.....)))))))).....((..((((.......)-)))..))..)))))..-- ( -24.90)
>DroEre_CAF1 47754 97 - 1
UGCAUCCCUCUGGAGACCAGGACUUCCGCACCAAACACGCCGCAUGUCCUGUUCUUCAGGGCAGCAAGUGGAGUAAGUGAAUCUC-UGAG------CUGCAAGG
......((((((((((.((((((..(.((.........)).)...)))))).))))))).(((((...(((((.........)))-)).)------)))).))) ( -33.20)
>DroYak_CAF1 43454 97 - 1
UGCAUCCCUCUGGGGAUCAGGACUUUCGCACCAAACACGCCGCUUGUCCUGUGCUUCAGGGCAGCAAAUGGAGUAAGUGAAUCCU-UUAA------CAGCAAGG
((((((((....))))).((((..(((((......((....(((.((((((.....)))))))))...))......)))))))))-....------..)))... ( -28.70)
>DroPer_CAF1 36587 89 - 1
UGCAUCCGUCUGGGGACCAGGACUUCCGCACGAAGCAUGCCGCCUGCCCUGUUCUUCAGGGCAGCAAGUGGAGUAAGUUUAGCCC-CAAA--------------
..........(((((....((((((.(((.....))...((((((((((((.....))))))))...)))).).))))))..)))-))..-------------- ( -33.90)
>consensus
UGCAUCCCUCUGGAGACCAGGACUUUCGAACCAAACACGCCGCUUGUCCUGUUCUUCAGGGCAGCAAAUGGAGUAAGUGAAUCUU_UUAG______CAGCUA__
(((.(((.(((((...)))))....................((.(((((((.....)))))))))....))))))............................. (-21.79 = -21.15 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:56 2006