| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,316,849 – 26,316,969 |
| Length | 120 |
| Max. P | 0.633368 |
| Location | 26,316,849 – 26,316,969 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.50 |
| Mean single sequence MFE | -37.40 |
| Consensus MFE | -28.32 |
| Energy contribution | -27.55 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26316849 120 - 27905053 AGCAUUCCGUGAUAAACAUUUAUAUCCGGAUCCAAGUGUACCGGUUCCACUUGAAGUGGAGCCAAGGUGAAGUAAGCAUGGCGUUUUCCAUCCAGGUAGCAUCUUAAGGGAUCACCACUU .....((((.((((........)))))))).....(((..((((((((((.....))))))))((((((........((((......))))........))))))..))...)))..... ( -34.79) >DroSec_CAF1 38935 120 - 1 AGCAUUCCGUGAUAAACAUUUAUAUCCGGAUCCAAGUGUACCGGUUCCACUUGAAGUGGAGCCAAGGUGAAGUAAGCAUGGCGUUUUCCAUCUAGGUAGCAUCUUAAGGGAUUACCACUU .((..((((.((((........))))))))........((((((((((((.....)))))))).(((((....((((.....))))..))))).)))))).......((.....)).... ( -35.60) >DroSim_CAF1 43588 120 - 1 AGCAUUCCGUGAUAAACAUUUAUAUCCGGAUCCAAGUGUACCGGUUCCACUUGCAAUGGAGCCAAGGUGAAGUAAGCAUGGCGUUUUCCAUCCAGGUAGCAACUUAAGGGAUCACCACUU .((..((((.((((........))))))))........(((((((((((.......)))))))..((.((((...((...))..))))...)).)))))).......((.....)).... ( -30.60) >DroEre_CAF1 46724 120 - 1 AGCAUGCCGUGAUAGACAUUGAUAUCCGGAUCCAGGUGCACCGGCUCCACUUGGAGUGGCGCCAGGGUGAAGUAAGCAUGGCGUUUUCCAUCCAGGUAGCAUUUCAGUGGAUCAGCACUC .((....((.((((........))))))(((((((((((((((((.((((.....)))).))).(((((....((((.....))))..))))).))).)))))....)))))).)).... ( -42.80) >DroWil_CAF1 37084 120 - 1 AGAACACCAUGAUAGACAUUGAUAUCAGGAUCCACAUGCACUUGCUCCACUUUAAGUGGGGCCAAAAUGAACGAUACGUGUCGUUUGGCAUCUAAAUAGCAGUGAAGUGAUUUGCCAGUG ......((.(((((........)))))))...(((((((....(((((((.....)))))))......(((((((....))))))).))))..........(..((....))..)..))) ( -31.30) >DroYak_CAF1 42444 120 - 1 AGCAUGCCGUGGUAGACAUUGAUGUCCGGAUCCAGGUGCACCGGCUCCACUUGCAGUGGCGCCAGGAUGAAGUAAGCAUGUCGUUUACCAUCCAGGUAGCAUUUCAAGGGAUCACCACUC ........(((((.((((....))))..(((((((((((((((((.((((.....)))).))).(((((..((((((.....))))))))))).))).))))))....)))))))))).. ( -49.30) >consensus AGCAUUCCGUGAUAAACAUUGAUAUCCGGAUCCAAGUGCACCGGCUCCACUUGAAGUGGAGCCAAGGUGAAGUAAGCAUGGCGUUUUCCAUCCAGGUAGCAUCUUAAGGGAUCACCACUU .......((.((((........))))))(((((.((((((((((((((((.....)))))))).(((((....((((.....))))..))))).))).))).))....)))))....... (-28.32 = -27.55 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:55 2006