Locus 9869

Sequence ID 3R_DroMel_CAF1
Location 26,313,427 – 26,313,526
Length 99
Max. P 0.890168
window15748

overview

Window 8

Location 26,313,427 – 26,313,526
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.96
Mean single sequence MFE -42.38
Consensus MFE -36.64
Energy contribution -36.68
Covariance contribution 0.04
Combinations/Pair 1.10
Mean z-score -1.76
Structure conservation index 0.86
SVM decision value 0.96
SVM RNA-class probability 0.890168
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26313427 99 - 27905053
------------------AUCCAGGGUCGCAUUACCAACGGCUACCCAGCCUACGAGGGCAAGGUACCCUACAUCGUGGGUCUCCUUUUCAGUGGCAAU---GGAAACUGGUGGUGCGGU
------------------........(((((((((((...(((((...((((....))))((((.((((........))))..))))....)))))...---(....)))))))))))). ( -38.70)
>DroSim_CAF1 38790 99 - 1
------------------AUCCAGGGUCGCAUUACCAACGGCUACCCAGCCUACGAGGGCAAGGUGCCCUACAUCGUGGGUCUGCUGUUCAGCGGCAAU---GGAAACUGGUGGUGCGGU
------------------........(((((((((((....(((....((((((((((((.....))))....)))))))).(((((.....))))).)---))....))))))))))). ( -41.00)
>DroEre_CAF1 43466 99 - 1
------------------AUCGAGGGUCGCAUCACCAACGGCUACCCAGCCUACGAGGGCAAGGUGCCCUACAUCGUGGGUCUGCUCUUCAGCGGCAAC---GGAAACUGGUGGUGCGGU
------------------........(((((((((((...(((...((((((((((((((.....))))....))))))).)))......)))(....)---(....)))))))))))). ( -42.20)
>DroYak_CAF1 39054 99 - 1
------------------AUCCAGGGUCGCAUCACCAACGGCUACCCAGCCUACGAGGGCAAGGUGCCCUACAUCGUGGGUCUGCUCUUCAGCGGCAAU---GGAAACUGGUGGUGCGGU
------------------........(((((((((((...(((.....((((((((((((.....))))....))))))))..(((....))))))...---(....)))))))))))). ( -41.80)
>DroAna_CAF1 41538 120 - 1
CCAGUGCCCGUUAAGGACAUCCAGGGUCGCAUUACCAACGGCUACCCCGCCUACGAGGGCAAGGUGCCCUACAUUGUCGGUCUGUUGUUCAGCGGCAACGGUGGUAACUGGUGGUGCGGU
.....((((.....((....)).))))((((((((((...(((((((((.(....(((((.....))))).....).)))...(((((......)))))))))))...)))))))))).. ( -48.20)
>consensus
__________________AUCCAGGGUCGCAUUACCAACGGCUACCCAGCCUACGAGGGCAAGGUGCCCUACAUCGUGGGUCUGCUCUUCAGCGGCAAU___GGAAACUGGUGGUGCGGU
..........................(((((((((((...(((.....((((((((((((.....))))....))))))))..(((....))))))......(....)))))))))))). (-36.64 = -36.68 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:53 2006