Locus 9867

Sequence ID 3R_DroMel_CAF1
Location 26,311,173 – 26,311,281
Length 108
Max. P 0.688048
window15746

overview

Window 6

Location 26,311,173 – 26,311,281
Length 108
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 73.95
Mean single sequence MFE -36.85
Consensus MFE -19.01
Energy contribution -18.18
Covariance contribution -0.83
Combinations/Pair 1.55
Mean z-score -1.70
Structure conservation index 0.52
SVM decision value 0.32
SVM RNA-class probability 0.688048
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26311173 108 + 27905053
AGUGUCCAACAAGUGGAUCCACGAGCGGGGACAGGAGUUCCGCAGACCCUGCGACUUGGAGGAGGAUCACGGCGAGUUCGCCAUCUAAUCC-----GGAGUCUAGUAUGCGU-A-
.(..((((.....))))..)(((.((((((...((....)).....))))))((((((((...((((...((((....))))))))..)))-----.))))).......)))-.- ( -37.40)
>DroPse_CAF1 33352 109 + 1
AGUUUCCAACAAGUGGAUACACGAGCGCGGCCAGGAGUUCCGACGGCCCUGUGCCUUGAACGAGGACAGUGGCGACUUCGCCAUCUAGUUU-----GGGCUCUAGUUAAUACAA-
.((.((((.....)))).))..((((.(((((.((....))...))))((((.((((....))))))))(((((....)))))........-----).))))............- ( -38.40)
>DroGri_CAF1 37292 93 + 1
AGUUUCCAACAAAUGGAUACACGAGCGCGGUCAGGAGUUCAGAAGGCCCUGCGCUUUGGAAGAGGAUCACGGUGAUUUUGCCAUCUAG---------GAG-----------A-A-
..(((((...............((((((((((............))))..))))))(((...((((((.....)))))).)))....)---------)))-----------)-.- ( -22.70)
>DroWil_CAF1 35203 114 + 1
AGUGUCUAACAAAUGGAUACAUGAACGAGGACAGGAGUUCCGCAGAUCCUGCGAUUUGACUGAGGAUCAUGGCGAUUUCGCCAUUUAGUUCUAGUGGGACACUAGUUAGUUCAA-
.(((((((.....))))))).(((((...(((.((.(((((((.((((((.((.......))))))))((((((....)))))).........))))))).)).))).))))).- ( -43.80)
>DroAna_CAF1 36310 109 + 1
AGUGUCAAAUAAGUGGAUCCACGAACGGGGUCAGGAGUUCCGUAGACCCUGUUCCAUGGACGAGGAUCAUGGCGACUUCGCCAUCUGAACU-----GGAGUCUAGUUAGUGA-AU
....(((..(((.((((((((.((((((((((.((....))...))))))))))..))))(.((..((((((((....)))))..))).))-----.)..)))).))).)))-.. ( -40.40)
>DroPer_CAF1 33204 109 + 1
AGUUUCCAACAAGUGGAUACACGAGCGCGGCCAGGAGUUCCGACGGCCCUGUGCCUUGAACGAGGACAGUGGCGACUUCGCCAUCUAGUUU-----GGGCUCUAGUUAAUACAA-
.((.((((.....)))).))..((((.(((((.((....))...))))((((.((((....))))))))(((((....)))))........-----).))))............- ( -38.40)
>consensus
AGUGUCCAACAAGUGGAUACACGAGCGCGGACAGGAGUUCCGAAGACCCUGCGCCUUGAACGAGGAUCAUGGCGACUUCGCCAUCUAGUUU_____GGACUCUAGUUAGUAC_A_
.((((((.....(((....)))..(((.((((.((....))...)))).)))...........))).)))((((....))))................................. (-19.01 = -18.18 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:51 2006