| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,310,892 – 26,310,999 |
| Length | 107 |
| Max. P | 0.939592 |
| Location | 26,310,892 – 26,310,999 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.93 |
| Mean single sequence MFE | -22.79 |
| Consensus MFE | -16.14 |
| Energy contribution | -16.67 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26310892 107 + 27905053 UAUAGCAUCAUCAUAU-UAACUUUUCCCUACUUCCCUUUUUUCCUCCU-UAUUCUCAGAUGAGUGAUGUGGAGCAGGGAGGAGCCACUGUCUUCACAUCCCUGCACACC ................-........................(((.(.(-(((((......)))))).).)))(((((((.(((........)))...)))))))..... ( -23.60) >DroSec_CAF1 35381 96 + 1 UAUAGCAUGA---UAUUUAACUUUUC---------CUUUUAUCCUCUU-UAAUCUCAGAUGAGUGAUGUGGAGCAGGGAGGAGCCACUGUCUUCACAUCCCUGCACACC ..........---...........((---------(...(((((((..-...........))).)))).)))(((((((.(((........)))...)))))))..... ( -22.82) >DroSim_CAF1 36294 95 + 1 UAUAGCAUGA---UAU-UAACUUUUC---------CUUUUAUCCGCUU-UAAUCUAAGAUGAGUGAUGUGGAGCAGGGAGGAGCCACUGUCUUCACAUCCCUGCACACC ..........---...-.........---------......(((((.(-((.((......)).))).)))))(((((((.(((........)))...)))))))..... ( -23.60) >DroEre_CAF1 37192 90 + 1 UAUUCAUUUC---G---UAUCUUUCC---------CUG---GCCUCCC-CAAUCUCAGAUGAGUGAUGUGGAGCAGGGAGGAGCCACCGUCUUCACCUCCCUGCACACC ..(((((.((---.---(((((....---------.((---(.....)-)).....)))))...)).)))))(((((((((..............)))))))))..... ( -26.64) >DroYak_CAF1 36548 91 + 1 UAUACAUUUU---UAA-UGCCUUUUC---------CUG----CGUUUU-UAAUCCCAGAUGAGUGAUGUGGAGCAGGGAGGCGCCACUGUCUUCACAUCCCUGCACACC ..........---...-(((......---------(((----.(....-....).)))...((.((((((((((((((.....)).))).))))))))).))))).... ( -22.30) >DroAna_CAF1 36035 89 + 1 UAUACAUAUU---UUA-UGA----------------UUUUCUCUUCUUUUUUUGUCAGAUGAGUGACGUGGAACAGGGAGGUGCCACUGUGUUUACUUCCCUUCACACU ..........---...-...----------------.................((((......))))(((((..(((((((((..........))))))))))).))). ( -17.80) >consensus UAUACAAUUA___UAU_UAACUUUUC_________CUUUU_UCCUCUU_UAAUCUCAGAUGAGUGAUGUGGAGCAGGGAGGAGCCACUGUCUUCACAUCCCUGCACACC ...........................................................((((.((((((((((((((.....)).))).))))))))).)).)).... (-16.14 = -16.67 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:50 2006