Locus 9864

Sequence ID 3R_DroMel_CAF1
Location 26,308,683 – 26,308,792
Length 109
Max. P 0.999895
window15742

overview

Window 2

Location 26,308,683 – 26,308,792
Length 109
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 70.26
Mean single sequence MFE -34.42
Consensus MFE -20.35
Energy contribution -23.10
Covariance contribution 2.75
Combinations/Pair 1.33
Mean z-score -2.94
Structure conservation index 0.59
SVM decision value 4.43
SVM RNA-class probability 0.999895
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26308683 109 + 27905053
GCCUGUUAAGUUCGGUGUCU-AAAAGUGUGCAGAGAUUUUAGAAAGUCUUAGUCCUGACUUUUUGGCCCAGCAUUGCAUGCUUUUAGUUGCCUUCUUU---------UAAUUACUGGCA
(((.((((((...((((.((-((((((((((((.(...((((((((((........)))))))))).....).)))))))))))))).))))....))---------))))....))). ( -36.90)
>DroSec_CAF1 33177 110 + 1
GCCUGUUAAGUAGGGUGUCUUAAAGGUAUGCAGAGAUUUUAGGAAGUCUUGGUUCAGACUUUUCAGUCCAUCGUUGCAUGCUUUUAGAUACGUUUUUU---------UAAUUACUGGCG
(((.((((((.((.((((((.((((((((((((.(((.((..(((((((......)))))))..))...))).)))))))))))))))))).))..))---------))))....))). ( -39.00)
>DroSim_CAF1 34088 109 + 1
GCCUGUUAAGUAGGGUGUCUUAAAGGUAUGCAGAGAUUUUAGGAAGU-UUGGUUCAGACUUUUCGGUCCAUCGUUGCAUGCUUUUAGAUAACUUUUUU---------UAAUUACUAACG
....((((((.(((((((((.((((((((((((.(((.(..((((((-(((...)))))))))..)...))).)))))))))))))))).))))).))---------))))........ ( -31.30)
>DroEre_CAF1 35224 101 + 1
GCCAGUUUAGUUGGCUGGCU-AA-----UGCGGUGAUUUUGGGCAGGCCUAGUGCCGACUUCUCCGCCCAUCCCUGCAUGCUUUUGGAUACCCUAACUGACGGAUUG------------
(((((((.....))))))).-.(-----(((((.((...(((((.((...(((....)))...))))))))).))))))............((........))....------------ ( -30.50)
>consensus
GCCUGUUAAGUAGGGUGUCU_AAAGGUAUGCAGAGAUUUUAGGAAGUCUUAGUUCAGACUUUUCGGCCCAUCGUUGCAUGCUUUUAGAUACCUUUUUU_________UAAUUACUGGCG
............((((((((.((((((((((((.(((.((((((((((........))))))))))...))).)))))))))))))))))))).......................... (-20.35 = -23.10 +   2.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:47 2006