Locus 9860

Sequence ID 3R_DroMel_CAF1
Location 26,293,847 – 26,293,944
Length 97
Max. P 0.710989
window15738

overview

Window 8

Location 26,293,847 – 26,293,944
Length 97
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 65.82
Mean single sequence MFE -16.88
Consensus MFE -9.12
Energy contribution -10.00
Covariance contribution 0.87
Combinations/Pair 1.22
Mean z-score -1.41
Structure conservation index 0.54
SVM decision value 0.38
SVM RNA-class probability 0.710989
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26293847 97 - 27905053
---------CACGUUUGCAUUCAUUGCUACGCACGCUGAUUAUUAGCU-UUGCAUACUAUCAGAAAUAUUCAGGAAAUUCCAGAAAGCACUUUUGAUAACGUACAUA
---------.((((..(((.....)))...(((.(((((...))))).-.)))....((((((((...(((.((.....)).))).....))))))))))))..... ( -17.90)
>DroSec_CAF1 20724 82 - 1
---------------------CAUUCGUACACACGCUGAUUAUCAGCUUUUGCAUUCUAUCAGAAAUAUUUUGGAAAUUCUAGAAAGCACUUUUGAUAACGU----A
---------------------....(((......((((.....))))..........((((((((...((((((.....)))))).....))))))))))).----. ( -14.60)
>DroSim_CAF1 20817 81 - 1
---------------------CAUUCGUACACACGCUGAUUAUCAGCU-UUGCAUUCUAUCAGAAAUAUUCUGGAAAUUCUAGAAAGCACUUUUGAUAACGU----A
---------------------....(((......((((.....)))).-........((((((((...((((((.....)))))).....))))))))))).----. ( -17.20)
>DroYak_CAF1 21446 90 - 1
UUCUAUAAGUAAGUUUGCAUUCAUCGGUAUGAAA-----------AGU-UUGCUGUUUAUCAGGAAU-UUGUAGAAAUUCCACAAAGCAGCAUUGAUAACGU----A
............(((..(((((((....))))).-----------...-.((((((((....(((((-((....)))))))...)))))))).))..)))..----. ( -17.80)
>consensus
_____________________CAUUCGUACACACGCUGAUUAUCAGCU_UUGCAUUCUAUCAGAAAUAUUCUGGAAAUUCCAGAAAGCACUUUUGAUAACGU____A
..................................((((.....))))..........((((((((...((((((.....)))))).....))))))))......... ( -9.12 = -10.00 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:43 2006