Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,274,749 – 26,274,856 |
Length | 107 |
Max. P | 0.677963 |
Location | 26,274,749 – 26,274,856 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.33 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -21.88 |
Energy contribution | -21.97 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.23 |
Mean z-score | -1.27 |
Structure conservation index | 0.69 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26274749 107 - 27905053 GUUCGAGGGUCUGCUCUGCACUCCAGAUGCCCUCUACAGGACCGCUUUCCAGCUGUUCGACCGCAAGGGCAACGGCACUGUUUCCUAUGGUGAGAAAAUACUAAU----UU .(((((((((....((((.....)))).))))))(((.(((......))).((((((...((....))..)))))).............))).))).........----.. ( -29.20) >DroVir_CAF1 1568 105 - 1 AUUCGAGGGCUUGCUCUGCGCCCCCGAUGCCCUCUACAGAACUGCCUUCCAGCUGUUUGACCGCCAGGGCAAUGGCUCAGUUUCAUAUGGUUAAUAU----UAUC--AUAU ..(((.((((.........)))).)))((((((.....((((.((......)).)))).......)))))).............(((((((......----.)))--)))) ( -26.80) >DroEre_CAF1 2002 109 - 1 CUUCGAGGGUCUGCUCUGCACCCCAGACGCCCUCUACAGGACCGCUUUCCAGCUGUUCGACCGCAAGGGCAACGGCACUGUAUCCUACGGUGAGAAAAUCCCAUC--CUAU ....((((((....((((.....)))).))))))...((((....(((((.((((((...((....))..))))))((((((...))))))).))))......))--)).. ( -32.70) >DroWil_CAF1 1594 107 - 1 CUUUGAGGGUUUACUCUGCACACCAGAUGCCCUAUAUAGAACAGCAUUUCAGCUGUUCGAUCGUCAGGGCAAUGGCACUGUGUCAUAUGGUAAGUAAUCUCAAUA----AA ..((((((.((((((.(((((((((..((((((.....(((((((......))))))).......)))))).)))...)))).))...))))))...))))))..----.. ( -36.70) >DroYak_CAF1 2038 107 - 1 CUUCGAGGGUCUGCUCUGCACCCCAGAUGCCCUCUACAGGACCGCUUUCCAGCUGUUCGACCGCAAGGGCAACGGCACUGUUUCCUACGGUAAGUAAAUCCUGUG----AA ....((((((....((((.....)))).))))))(((((((..((((....((((((...((....))..))))))(((((.....)))))))))...)))))))----.. ( -39.10) >DroAna_CAF1 1841 110 - 1 CUUCGAGGGUCUACUGUGCACCCCCGAUGCCCUCUACAGGACCGCCUUCCAGCUGUUUGACCGUCAGGGAAAUGGCACCGUCUCCUAUGGUUAGUUAUU-UGAAAACAUAA ....((((((...(((((((.......))).....))))....))))))(((.((.((((((((..((((.(((....))).)))))))))))).)).)-))......... ( -26.60) >consensus CUUCGAGGGUCUGCUCUGCACCCCAGAUGCCCUCUACAGGACCGCUUUCCAGCUGUUCGACCGCAAGGGCAACGGCACUGUUUCCUAUGGUAAGUAAAU_CUAUA____AA ....((((((....((((.....)))).))))))....(((......))).((((((...((....))..))))))(((((.....))))).................... (-21.88 = -21.97 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:42 2006