| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,267,998 – 26,268,088 |
| Length | 90 |
| Max. P | 0.607911 |
| Location | 26,267,998 – 26,268,088 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 83.96 |
| Mean single sequence MFE | -16.96 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.50 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26267998 90 + 27905053 AACCCUAAUCGUCCAGCAGUUUCCAACAUUUUC------AAAUGCCUUCCGUCUUUGGCAGGCUAACAUGACAAAUGUGGUUAUACUAAUAUUUGA .................(((..(((.(((((((------(...((((.(((....))).)))).....))).))))))))....)))......... ( -17.50) >DroSec_CAF1 9830 96 + 1 AACCCUAAUCGUCCAACACUUUGGAACAUUUUCAUAUCCAAAUGCCUUCCGUCUUUGGCAGGCUAACAUGACAAAUGUGGUUAUUCUAAUAUUUGA ((((.......(((((....)))))((((((((((........((((.(((....))).))))....)))).)))))))))).............. ( -20.20) >DroSim_CAF1 9881 96 + 1 AACCCUAAUCGUCCAACACUUUCGAACAUUUUCAUAUCCAAAUGCCUUCCGUCUUUGGCAGGCUAACAUGACAAAUGUGGUUAUUCCAAUAUUUGA ((((....(((...........)))((((((((((........((((.(((....))).))))....)))).)))))))))).............. ( -16.70) >DroEre_CAF1 9553 96 + 1 AACCUUAAUCGUUCGCCACUUUCCAAUAUUUUCAUAUCCAAAUGCCCUCCGUCUUUGGCAGGCUAACAUGACAAAUGUUGUUAUUUCAAUAUUUGA ..........(((.(((........((((....))))(((((.((.....)).)))))..))).)))....(((((((((......))))))))). ( -17.80) >DroYak_CAF1 10020 80 + 1 AACCUUAAUCGUCCAGCACUUGCCAAUAUUUUCAUAUCCAAAUGCCUUCCGUCUUUGGCAGGCUAACAUGACAAAUGUU--U-------------- ...............((....)).(((((((((((........((((.(((....))).))))....)))).)))))))--.-------------- ( -12.60) >consensus AACCCUAAUCGUCCAACACUUUCCAACAUUUUCAUAUCCAAAUGCCUUCCGUCUUUGGCAGGCUAACAUGACAAAUGUGGUUAUUCCAAUAUUUGA .........................((((((((((........((((.(((....))).))))....)))).)))))).................. (-11.14 = -11.50 + 0.36)
| Location | 26,267,998 – 26,268,088 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 83.96 |
| Mean single sequence MFE | -22.98 |
| Consensus MFE | -14.32 |
| Energy contribution | -16.40 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26267998 90 - 27905053 UCAAAUAUUAGUAUAACCACAUUUGUCAUGUUAGCCUGCCAAAGACGGAAGGCAUUU------GAAAAUGUUGGAAACUGCUGGACGAUUAGGGUU ..............((((....(((((......((((.((......)).))))....------......((.(....).))..)))))....)))) ( -20.70) >DroSec_CAF1 9830 96 - 1 UCAAAUAUUAGAAUAACCACAUUUGUCAUGUUAGCCUGCCAAAGACGGAAGGCAUUUGGAUAUGAAAAUGUUCCAAAGUGUUGGACGAUUAGGGUU ..............((((....(((((......((((.((......)).)))).(((((((((....))).))))))......)))))....)))) ( -25.50) >DroSim_CAF1 9881 96 - 1 UCAAAUAUUGGAAUAACCACAUUUGUCAUGUUAGCCUGCCAAAGACGGAAGGCAUUUGGAUAUGAAAAUGUUCGAAAGUGUUGGACGAUUAGGGUU ..............((((....(((((......((((.((......)).)))).(((((((((....))))))))).......)))))....)))) ( -26.10) >DroEre_CAF1 9553 96 - 1 UCAAAUAUUGAAAUAACAACAUUUGUCAUGUUAGCCUGCCAAAGACGGAGGGCAUUUGGAUAUGAAAAUAUUGGAAAGUGGCGAACGAUUAAGGUU ...................(.((((((((....((((.((......)).)))).(((.(((((....))))).))).)))))))).)......... ( -21.80) >DroYak_CAF1 10020 80 - 1 --------------A--AACAUUUGUCAUGUUAGCCUGCCAAAGACGGAAGGCAUUUGGAUAUGAAAAUAUUGGCAAGUGCUGGACGAUUAAGGUU --------------.--..((((((((......((((.((......)).)))).....(((((....)))))))))))))................ ( -20.80) >consensus UCAAAUAUUAGAAUAACCACAUUUGUCAUGUUAGCCUGCCAAAGACGGAAGGCAUUUGGAUAUGAAAAUGUUGGAAAGUGCUGGACGAUUAGGGUU ..............((((....(((((......((((.((......)).)))).(((.(((((....))))).))).......)))))....)))) (-14.32 = -16.40 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:41 2006