Locus 9857

Sequence ID 3R_DroMel_CAF1
Location 26,267,579 – 26,267,669
Length 90
Max. P 0.730936
window15734

overview

Window 4

Location 26,267,579 – 26,267,669
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 97.48
Mean single sequence MFE -24.92
Consensus MFE -22.07
Energy contribution -22.57
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.89
SVM decision value 0.42
SVM RNA-class probability 0.730936
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26267579 90 - 27905053
CCACAUCCUGCUCGAUUGCCUGGGAGUCCUGCACUUGAUGUGCGCUUAAUGUUGACACCGACGCUUUGGCACUUUACAGCCAUUUAAGCC
.((((((.(((..((((.(....)))))..)))...)))))).((((((.((((....))))....((((........)))).)))))). ( -25.30)
>DroSec_CAF1 9420 90 - 1
CCACAUCCUGCUCGAUUGCCUGGGAGUCCUGCACUUGAUGUGCGCUUAAUGUUGACACCGACGCUUUGGCACUUUACAGCCAUUUAAGCC
.((((((.(((..((((.(....)))))..)))...)))))).((((((.((((....))))....((((........)))).)))))). ( -25.30)
>DroSim_CAF1 9462 90 - 1
CCACAUCCUGCUCGAUUGCCUGGGAGUCCUGCACUUGAUGUGCGCUUAAUGUUGACACCGACGCUUUGGCACUUUACAGCCAUUUAAGCC
.((((((.(((..((((.(....)))))..)))...)))))).((((((.((((....))))....((((........)))).)))))). ( -25.30)
>DroEre_CAF1 9132 90 - 1
CCACAUCCUGCUCGAUUGCCUGAGAGUCCUGCACUUGAUGUGCGCUUAAUGUUGACACCGACGCUUUGGCACUUUACAGCCAUUUAAGCC
.((((((.(((..((((.......))))..)))...)))))).((((((.((((....))))....((((........)))).)))))). ( -24.20)
>DroYak_CAF1 9588 90 - 1
CCACAUCCUGCUCGAUUGCCUGAGAGUCCUGCACUUGAUGUGCGCUUAAUGUUGACACCGACGCUUUGGCACUUUACAGCCAUUUAAGCC
.((((((.(((..((((.......))))..)))...)))))).((((((.((((....))))....((((........)))).)))))). ( -24.20)
>DroAna_CAF1 21905 90 - 1
GCACAUCCUUCUCGAUAGCCAGAGAGUCCUGCACUUGAUGUGCGCUUAAUGUUGACACGGACGCUUUGGCACUUUACAGCCAUUUAAGCC
((..(((......))).(((((((.((((.((((.....))))((.....))......)))).)))))))........)).......... ( -25.20)
>consensus
CCACAUCCUGCUCGAUUGCCUGAGAGUCCUGCACUUGAUGUGCGCUUAAUGUUGACACCGACGCUUUGGCACUUUACAGCCAUUUAAGCC
.((((((.(((..((((.......))))..)))...)))))).((((((.((((....))))....((((........)))).)))))). (-22.07 = -22.57 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:40 2006