Locus 9856

Sequence ID 3R_DroMel_CAF1
Location 26,256,899 – 26,256,989
Length 90
Max. P 0.786590
window15733

overview

Window 3

Location 26,256,899 – 26,256,989
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 79.63
Mean single sequence MFE -29.11
Consensus MFE -21.33
Energy contribution -19.73
Covariance contribution -1.60
Combinations/Pair 1.65
Mean z-score -1.47
Structure conservation index 0.73
SVM decision value 0.57
SVM RNA-class probability 0.786590
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26256899 90 + 27905053
ACGGUGGAGGAUCCUCCACUUUGGGACUGCUCAGCGUUAGCUCCCUGCUGGCUAUAGUCCUCUCCAUCCGCCUAGCCUUGUAGUAAUCCU
..(((((((....)))))))..((((.(((((((.((((((.....)).(((.................))))))).))).)))).)))) ( -26.63)
>DroVir_CAF1 7236 90 + 1
AGGAUGGUGGAGCUGCUGCGCUUAGCGUUUUGAGCCUUGGCUCGCUGUUGACUCUGGUUCUCUCCAUGAGAAUUAGCUUCUAGAGACUUU
..(((((((.((((...(.((((((....)))))))..)))))))))))((..(((((((((.....)))))))))..)).......... ( -26.60)
>DroSec_CAF1 7139 90 + 1
ACGGUGGAGGAUCCUCCACUUUGGGACUGCUCAGCGUUAGCUCCUUGCUGGCCAUAGUCCUCUCCAUCCGCCUAGCCUUGUAGUAAUCCU
..((((((((.....)).....((((((((.(((((.........)))))))...)))))).....)))))).................. ( -26.90)
>DroSim_CAF1 6519 90 + 1
ACGGUGGAGGCUCCUCCACUUUGGGACUGCUCAGCGUUAGCUCCCUGCUGGCCAUAGUCCUUUCCAUCCGCCUAGCCUUGUAGUAAUCCU
..(((((((....)))))))..((((.(((((((.((((((.....)).(((.................))))))).))).)))).)))) ( -26.13)
>DroEre_CAF1 7139 90 + 1
ACGGUGGCGGAGCCUCCACUCUGGGACUGCUCAGCGCCAGCUCCUUGCUGGCCAUAGUCCUCUCCGUCCGCCUAGCCCUGUAGUAAUCCU
..((((((((((..........(((((((....(.((((((.....))))))).)))))))))))).))))).................. ( -35.70)
>DroYak_CAF1 7207 90 + 1
ACGGCGGAGGAGCCUCCGCUUUGGGACUGCUCAGCAUCAGCUCCUUGCUGGCCAUAGUCCUGUCCAUCCGCCUAGCUUUGUAGUGAUCCU
..(((((((((((....))...((((((((.(((((.........)))))))...)))))).))).))))))..(((....)))...... ( -32.70)
>consensus
ACGGUGGAGGAGCCUCCACUUUGGGACUGCUCAGCGUUAGCUCCCUGCUGGCCAUAGUCCUCUCCAUCCGCCUAGCCUUGUAGUAAUCCU
..(((((((....)))))))..((((.(((((((.((((((.....)))))).................((...)).))).)))).)))) (-21.33 = -19.73 +  -1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:39 2006