| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,249,892 – 26,250,007 |
| Length | 115 |
| Max. P | 0.827272 |
| Location | 26,249,892 – 26,250,007 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.70 |
| Mean single sequence MFE | -36.53 |
| Consensus MFE | -19.53 |
| Energy contribution | -20.37 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26249892 115 - 27905053 GAGCAGCUUCACGUUCUUGUAGUGCGGCUCGAUGCUGUGCUUGCAUAGGAUGCACUGCUGGGGGUCCUUUUCAUAGGGAUUCUUUAUGUCGAUCGGCAGAUCCAAGUCGGACGAC----- ...((((....(((((((((((..((((.....))))..).)))).))))))....))))(((((((((.....)))))))))....((((.(((((........))))).))))----- ( -43.20) >DroVir_CAF1 397 120 - 1 CAGUAGCUUCACGUUCUUGUAGUGCGGUGUUAUGUUGUGCUUGCACAAUAUGCACAGCUGACGAUCCUUUUUAUAGGGAUUUGCUAUGUCUAUCGGUUCGUCCGGGUUUGCUGCCGUCAA (((((((((.(((..((.((((.(((((((.((((((((....))))))))))))(((....(((((((.....))))))).))).))))))).))..)))..))).))))))....... ( -35.90) >DroGri_CAF1 512 112 - 1 UAGCAGCUUCACAUUCUUGUAGUGCGGCACAAUGUUGUGCUUGCACAAGAUGCACUCCUGGCGAUCCUUCUCGAAGGGAUUCGCCAUUUCGAUCGGUUCGUCAGAUUCUGCU-------- .((((((.(((((....))).((((((((((....))))).)))))..)).))....(((((((.((...((((((((.....)).))))))..)).)))))))....))))-------- ( -40.80) >DroEre_CAF1 147 115 - 1 AAGCAGCUUCACGUUCUUGUAGUGCGGCUCGAUGCCGUGCUUGCACAGGAUGCACUGCUGGGGUUCCUUUUCAUAUGGAUUCGUUAUGUCAAUUGGAAAAUCCGAGUCGCUUGAU----- ((((.......(((((((((((..((((.....))))..).)))).))))))....(((.(((((((..((.((((((.....)))))).))..)))..)))).))).))))...----- ( -36.30) >DroWil_CAF1 177 114 - 1 CAGCAAUUUCACAUUCUUGUAAUGAGGAUGGAUGUUGUGCUUGCACAGUAUACACUGUUGCGGAUCCUUUUGAAAGGGAUUUGUUAUGUCAAUUGGUUCAUCCGGAUUGC-UGUU----- (((((((((.(((....))).....((((((((((((.((..(((((((....)))).)))((((((((.....)))))))).....))))))..)))))))))))))))-))..----- ( -35.30) >DroAna_CAF1 72 112 - 1 CAGCAGCUUAACAUUUUUGUAGUGUGGGGCAAUGUUGUGCUUGCACAAGAUACACUUCUGAGGAUCCUUUUCGUAAGGAUUCGUAAUGUCAAUUGGUAAAUCCGAAUCC---GGC----- (((..(((..(((((.....)))))..))).((.(((((....))))).))......))).((((((((.....))))))))..........((((.....))))....---...----- ( -27.70) >consensus CAGCAGCUUCACAUUCUUGUAGUGCGGCUCGAUGUUGUGCUUGCACAAGAUGCACUGCUGGGGAUCCUUUUCAUAGGGAUUCGUUAUGUCAAUCGGUACAUCCGAGUCGG_UGAC_____ ...((((....(((((((((((..((((.....))))..).)))).))))))....)))).((((((((.....))))))))..........((((.....))))............... (-19.53 = -20.37 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:34 2006