Locus 9853

Sequence ID 3R_DroMel_CAF1
Location 26,249,558 – 26,249,671
Length 113
Max. P 0.975731
window15727

overview

Window 7

Location 26,249,558 – 26,249,671
Length 113
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 82.16
Mean single sequence MFE -30.10
Consensus MFE -21.74
Energy contribution -22.26
Covariance contribution 0.52
Combinations/Pair 1.17
Mean z-score -2.53
Structure conservation index 0.72
SVM decision value 1.76
SVM RNA-class probability 0.975731
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26249558 113 - 27905053
CCGUGUAGCUGUGAACAGCUGUU---CGGCAGUGCUGGUAAAUUCCAGAUUGUAACAUGCGUGCAACCAUCGAUAAAUCGAUUAGUUCGCAGCUUAAUUUAUAUUUAAUAA-AACAC
..((((((((((((((.((((((---..(((((.((((......))))))))))))).))........(((((....)))))..))))))))))...(((((.....))))-))))) ( -35.30)
>DroSec_CAF1 215319 109 - 1
CUCUGUAGCUGUGAACAGCUGUU---CGGCAGUGCUGGUAAAUUCCAGAUUGUAACAUGCGUGGAACCAUCGAUAAAUCGAUUAGUUCACAGCUUAC----UAUUUAAUAA-AACAC
....((((((((((((.((((((---..(((((.((((......))))))))))))).))........(((((....)))))..))))))))).)))----..........-..... ( -34.40)
>DroSim_CAF1 222507 109 - 1
CUCUGUAGCUGUGAACAGCUGUU---CGGCAGUGUUGGUAAAUUCCAGAUUGUAACAUGCGUGCAACCAUCGAUAAAUCGAUUAGUUCACAGCUUAC----UAUUUAAUAA-AACAC
....((((((((((((.((((((---..(((((.((((......))))))))))))).))........(((((....)))))..))))))))).)))----..........-..... ( -31.80)
>DroEre_CAF1 230469 106 - 1
GACAG----ACUGAACAGCUGUG---UUGCAGUGUUGGUGAAUGCCAGAUGGAAACAUGCGUGCAUGCAUCGAUAAAUCGAUUAGUUCGCUGCCAAA----AAAUUAAUAAAAACAC
.((((----.((....)))))).---..((((((((((((.(((((..(((....)))..).)))).))))))).....((.....)))))))....----................ ( -26.80)
>DroYak_CAF1 227955 109 - 1
GUCAG----UAUGAACAGCUGUUUUUUUACAGUGUUGGUGAAUGCCAGAAGGUAACAUGCGUGCAGACAUCGAUAAAUCGAUUAGUUCGCUGCUUAA----AAAUUAAUAAAAACAC
....(----((((((((.((((......))))))))......((((....)))).)))))..((((..(((((....))))).......))))....----................ ( -22.20)
>consensus
CUCUGUAGCUGUGAACAGCUGUU___CGGCAGUGUUGGUAAAUUCCAGAUUGUAACAUGCGUGCAACCAUCGAUAAAUCGAUUAGUUCGCAGCUUAA____UAUUUAAUAA_AACAC
.......(((((((((.(((((......))))).((((......))))....................(((((....)))))..)))))))))........................ (-21.74 = -22.26 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:33 2006