Locus 9851

Sequence ID 3R_DroMel_CAF1
Location 26,246,468 – 26,246,568
Length 100
Max. P 0.704685
window15724

overview

Window 4

Location 26,246,468 – 26,246,568
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -19.60
Consensus MFE -18.34
Energy contribution -17.90
Covariance contribution -0.44
Combinations/Pair 1.11
Mean z-score -0.44
Structure conservation index 0.94
SVM decision value 0.36
SVM RNA-class probability 0.704685
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26246468 100 - 27905053
AAAUGUGCUUUCAGCUUUCAAAAGAAGUCCUUUGCGAACCAUAACUUCAUCUCGAGCGUUGAAGUAUUAGCUUUUCCGCGCACGCUCCUCUCGCUAAUUA
....((((...............(((((....((.....))..))))).......(((..(((((....)))))..)))))))((.......))...... ( -19.10)
>DroSec_CAF1 212216 80 - 1
GAAGGUGCUUUCAGCUUCCAAAAGAAGUCCU--------------------UCGAGCGUUGAAGUAUUAGCUUUUCCGCGCACGCUCCUCCCGCUAAUUA
....((((.....(((((.....)))))...--------------------....(((..(((((....)))))..)))))))((.......))...... ( -19.30)
>DroSim_CAF1 219360 100 - 1
GAAGGUGCUUUCAGCUUUCAAGAAAAGUCCGUUGCGAACCAUAACUUCAUCUCGAGCGUUGAAGUAUUAGCUUUUCCGCGCACGCUCCUCUCGCUAAUUA
(((((.((.....(((((.....)))))..((.(((((.......))).......(((..(((((....)))))..))))))))).))).))........ ( -20.40)
>consensus
GAAGGUGCUUUCAGCUUUCAAAAGAAGUCCUUUGCGAACCAUAACUUCAUCUCGAGCGUUGAAGUAUUAGCUUUUCCGCGCACGCUCCUCUCGCUAAUUA
....((((.....(((((.....)))))...........................(((..(((((....)))))..)))))))((.......))...... (-18.34 = -17.90 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:31 2006