Locus 9850

Sequence ID 3R_DroMel_CAF1
Location 26,236,882 – 26,236,979
Length 97
Max. P 0.592986
window15723

overview

Window 3

Location 26,236,882 – 26,236,979
Length 97
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 79.97
Mean single sequence MFE -23.29
Consensus MFE -12.47
Energy contribution -14.11
Covariance contribution 1.64
Combinations/Pair 1.23
Mean z-score -1.99
Structure conservation index 0.54
SVM decision value 0.12
SVM RNA-class probability 0.592986
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26236882 97 + 27905053
AGCGAUGUGUUCCCACAUCCUCAUGUGCAUAUCAUCCAUCGAUAGUUCCACAUUUGAUAUGCCAUCAGA--GA-G--CAC----ACACAUCAAAGACAGGCUUUGC
.((((((((....))))))((((((.((((((((......((....))......)))))))))))..))--).-)--)..----......(((((.....))))). ( -25.20)
>DroSec_CAF1 202700 97 + 1
AGCGAUGUGUUCCCACAUCCUCAUGUGCAUAUUAUCCAUCGAUAGUUCCACAUUUGAUAUGCCAUCAGA--GG-G--CAC----ACACAUCAAAGACAGGCUUUGC
.(((((((((.(((.........((((...((((((....))))))..))))((((((.....))))))--))-)--...----)))))))((((.....)))))) ( -24.80)
>DroSim_CAF1 209841 97 + 1
AGCGAUGUGUUCCCACAUCCUCAUGUGCAUAUCAUCCAUCGAUAGUUCCACAUUUGAUAUGCCAUCAGA--GG-G--CAC----ACACAUCAAAGACAGGCUUUGC
.(((((((((.......((((((((.((((((((......((....))......)))))))))))..))--))-)--...----)))))))((((.....)))))) ( -26.40)
>DroEre_CAF1 215548 97 + 1
AGCGAUGUGUUGCCACAUACCCAUGAGCAUGUCAUCCAUCGAUAGUUCCACAUUUGAUAUGCCAUCAAG--AA-G--CAC----ACACAUCAAAGGCAGCCUUUGC
.((((((((((((.........(((.((((((((......((....))......)))))))))))....--..-)--)).----)))))))(((((...))))))) ( -25.66)
>DroYak_CAF1 215125 84 + 1
AGCGA----------GAUACUCGUGUGCAUAUCAUCCAUCGAUAGUUCCACAUUUGAUAUGCCAUCAAG--AGAGCACAC----ACACAUCAAAGGCAGG------
.((((----------(...)))((((((.((((.......))))........((((((.....))))))--...))))))----...........))...------ ( -17.90)
>DroAna_CAF1 220920 94 + 1
AAAGAUGUGUGUGCACAUAU-------CACAUCAUCCAUCGAUAGUUUCACAUUUGAUAUGCCAUCAAGGAAA-G--CACUGGAACACAUCAAAGGCAGGAUAU--
...(((((((((((.(((((-------((.(((.......))).(.....)...)))))))((.....))...-)--)))....))))))).............-- ( -19.80)
>consensus
AGCGAUGUGUUCCCACAUACUCAUGUGCAUAUCAUCCAUCGAUAGUUCCACAUUUGAUAUGCCAUCAAA__AA_G__CAC____ACACAUCAAAGACAGGCUUUGC
...(((((((.........((.(((.((((((((......((....))......))))))))))).))................)))))))............... (-12.47 = -14.11 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:30 2006