Locus 9849

Sequence ID 3R_DroMel_CAF1
Location 26,236,458 – 26,236,550
Length 92
Max. P 0.505182
window15722

overview

Window 2

Location 26,236,458 – 26,236,550
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 86.99
Mean single sequence MFE -27.43
Consensus MFE -24.09
Energy contribution -23.62
Covariance contribution -0.47
Combinations/Pair 1.08
Mean z-score -1.35
Structure conservation index 0.88
SVM decision value -0.06
SVM RNA-class probability 0.505182
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26236458 92 + 27905053
AUCGUAGUCAUCAUCAAAGUCCGCCGCAGGACAAAGGCGUUGCUAAAGUUAUUAACGCUUCGUGCGGCGUCAAUCAAAUUGGGGCUUCCCGA---------
................((((((((((((.((....(((((((.((....)).))))))))).))))))..((((...)))))))))).....--------- ( -28.30)
>DroPse_CAF1 215875 101 + 1
AUCAUCAUAAUCAUCAAAGUCUGCCGCAGGACAAAGGCGUUGCUAAAGUUAUUAACGCGUCGUGUGGCGUCAAUCAACUUGGGGCUUCCCAGCUCUCGAUU
........((((..........((((((.(((....((((((.((....)).))))))))).))))))............((((((....)))))).)))) ( -27.60)
>DroEre_CAF1 215141 91 + 1
-UCGCAAUCAUCAUCAAAGUCCGCCGCAGGACAAAGGCGUUGCUAAAGUUAUUAACGCUUCGUGCGGCGUCAAUCAAAUUGGGGCUUCCCAG---------
-...............((((((((((((.((....(((((((.((....)).))))))))).))))))..((((...)))))))))).....--------- ( -28.30)
>DroYak_CAF1 214712 91 + 1
-UCGUAGUCAUCAUCAAAGUCCGCCGCAGGACAAAGGCGUUGCUAAAGUUAUUAACGCUUCGUGCGGCGUCAAUCAAAUUGGGGCUUCCCAA---------
-...............((((((((((((.((....(((((((.((....)).))))))))).))))))..((((...)))))))))).....--------- ( -28.30)
>DroAna_CAF1 220365 89 + 1
AUCG---UCAUCAUCAAAGUCUGCCGCAGGACAAAGGCGUUGCUAAAGUUAUUAACGCGUCAUGCGGCGUCAAUCAACUUGGGGCUUCUCCA---------
....---.........((((((((((((.(((....((((((.((....)).))))))))).))))))..(((.....))))))))).....--------- ( -24.50)
>DroPer_CAF1 218093 101 + 1
AUCAUCAUAAUCAUCAAAGUCUGCCGCAGGACAAAGGCGUUGCUAAAGUUAUUAACGCGUCGUGUGGCGUCAAUCAACUUGGGGCUUCCCAGCUCUCGAUU
........((((..........((((((.(((....((((((.((....)).))))))))).))))))............((((((....)))))).)))) ( -27.60)
>consensus
AUCGUAAUCAUCAUCAAAGUCCGCCGCAGGACAAAGGCGUUGCUAAAGUUAUUAACGCGUCGUGCGGCGUCAAUCAAAUUGGGGCUUCCCAA_________
................((((((((((((.((.....((((((.((....)).)))))).)).))))))..(((.....))))))))).............. (-24.09 = -23.62 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:29 2006