| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,231,392 – 26,231,487 |
| Length | 95 |
| Max. P | 0.721443 |
| Location | 26,231,392 – 26,231,487 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 71.55 |
| Mean single sequence MFE | -21.58 |
| Consensus MFE | -10.40 |
| Energy contribution | -10.62 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26231392 95 - 27905053 CCUUCCAUAGCAAAACCUCCAUGCAGUAG-CCUCUUUCGAA-UCCAAAAGGAAUGCAGACCUGUCAUAACGUUGACAAAGUCUGACACGUUGGCAUU .........(((.........)))....(-((.....((..-(((....))).(((((((.(((((......)))))..))))).))))..)))... ( -21.40) >DroSec_CAF1 197275 85 - 1 CCUUCCAUGGGAGAACCUCC----------CAU-CUUCAGA-CCCAAAUGAAAUGCAGACCUGUCAUAACGUUGACGAAGUCUGACACGUUGACAUU ......(((((((...))))----------)))-.((((..-......)))).(((((((.(((((......)))))..))))).)).......... ( -21.30) >DroSim_CAF1 204406 85 - 1 CCUUCCAUAGGGGAACCUCC----------CAU-CUUCAGA-ACCAAAAGGAAUGCAGACCUGUCAUAACGUUGACAAAGUCUGACACGUUGGCAUU ((((((...((((....)))----------).(-(....))-.......))))(((((((.(((((......)))))..))))).))....)).... ( -20.60) >DroEre_CAF1 207450 95 - 1 CCCUCUACAGGAAAGCCACCAUCCAGUAGCCAC-UUUCAGA-CCCGAAAGGAAUGCAGACUUGUCAUAACGUUGACAAAGUCUGACACAUUGGCAUU .....(((.(((.........))).)))((((.-.......-.((....))..(((((((((((((......)))).))))))).))...))))... ( -27.50) >DroYak_CAF1 208706 79 - 1 ----------------CAUCAUGCAGUAGUCAC-UUUCAGA-GCCGAAAGGAAUGCAGACUUGUCAUAACGUUGACAAAGUCUGACACGUUGGCAUU ----------------....((((.((.(((..-...((..-.((....))..)).((((((((((......)))).)))))))))))....)))). ( -23.20) >DroAna_CAF1 210286 89 - 1 CUUUCCC-AG--ACGCCCCCAACCAGC----AA-CUUCAAAUGCCAAGUUAACUGCAGAGUUGUCAUAACGCUGACAAAGUUUGACGCGCCGGCAUU .....((-.(--.(((.......(((.----((-(((........)))))..)))((((.((((((......))))))..))))..)))).)).... ( -15.50) >consensus CCUUCCAUAGGAAAACCUCCAU_CAGU___CAU_CUUCAGA_CCCAAAAGGAAUGCAGACCUGUCAUAACGUUGACAAAGUCUGACACGUUGGCAUU ...........................................((((........(((((.(((((......)))))..))))).....)))).... (-10.40 = -10.62 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:28 2006