| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,196,369 – 26,196,479 |
| Length | 110 |
| Max. P | 0.749044 |
| Location | 26,196,369 – 26,196,479 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.39 |
| Mean single sequence MFE | -38.11 |
| Consensus MFE | -31.58 |
| Energy contribution | -30.88 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26196369 110 + 27905053 UGGGCGUGGUCGCGCCUACUCACAUAGAAGAAUUUCUGCUGCUCAGGUAAAGGCGUUGACCACGCCCCGCCCGGCCCA--GAACACGCCCACCACCCCCGCCCCUUACCCG---A .(((((((((((((((((((....(((.((.....)).)))....)))..))))).))))))))))).....(((...--......)))......................---. ( -36.40) >DroPse_CAF1 192072 106 + 1 AGGGUAUGGUCGCGCCUACUCACAUAGAAGAAUUUCUGCUGCUCAGGUAAAGGCGUGGACCCUGCCCUGCCCCUACCCGCGGA----UCCCCCAUCCCCAUCCCUCGGCC----- ((((((.(((((((((((((....(((.((.....)).)))....)))..)))))).)))).))))))(((.........(((----(.....)))).........))).----- ( -33.57) >DroSec_CAF1 178081 110 + 1 UGGGCGUGGUCGCGUCUACUCACAUAGAAGAAUUUCUGCUGCUCAGGUAAAGGCGUUGACCACGCCCCGCCCGGCCCA--GAGCACGCCCACCACCCCCGCCCCUUUCCCG---A .(((((((((((((((((((....(((.((.....)).)))....)))..))))).)))))))))))....(((...(--(((...((...........))..)))).)))---. ( -34.50) >DroEre_CAF1 188093 111 + 1 UGGGCGUGGUCGCGUCUACUCACAUAGAAGAAUUUCUGCUGCUCAGGUAAAGGCGUUGACCACGCCCCGCCCGGUCCG-GGGACACGCCCACCACCCCCGCCCCUUUCGCG---A .(((((((((((((((((((....(((.((.....)).)))....)))..))))).)))))))))))(((..((..((-(((.............)))))..))....)))---. ( -45.92) >DroAna_CAF1 189102 114 + 1 UGGGCGUGGUUGCGCCUACUCACAUAGAAGAAUUUCUGCUGCUCAGGUAAAGGCGUUGACCACGCCCAGCCCGGCUCA-AGGACAUGCCCAUCACCCCCGAUCCAUGGGCUAAAA .(((((((((((((((((((....(((.((.....)).)))....)))..))))).)))))))))))((((((((...-.......))).(((......)))....))))).... ( -44.70) >DroPer_CAF1 194171 106 + 1 AGGGUAUGGUCGCGCCUACUCACAUAGAAGAAUUUCUGCUGCUCAGGUAAAGGCGUGGACCUUGCCCUGCCCCUACCCGCGGA----UCCCCCAUCCCCAUCCCUCGGCC----- ((((((.(((((((((((((....(((.((.....)).)))....)))..)))))).)))).))))))(((.........(((----(.....)))).........))).----- ( -33.57) >consensus UGGGCGUGGUCGCGCCUACUCACAUAGAAGAAUUUCUGCUGCUCAGGUAAAGGCGUUGACCACGCCCCGCCCGGCCCA__GGACACGCCCACCACCCCCGCCCCUUGCCCG___A .(((((((((((((((((((....(((.((.....)).)))....)))..)))))).))))))))))................................................ (-31.58 = -30.88 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:23 2006