Locus 9843

Sequence ID 3R_DroMel_CAF1
Location 26,193,750 – 26,193,851
Length 101
Max. P 0.809612
window15714

overview

Window 4

Location 26,193,750 – 26,193,851
Length 101
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 86.41
Mean single sequence MFE -14.62
Consensus MFE -9.45
Energy contribution -9.45
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -2.45
Structure conservation index 0.65
SVM decision value 0.64
SVM RNA-class probability 0.809612
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26193750 101 - 27905053
UAUCUUUAU-CUUAAGCUUUAUCCCUAUACCCAUUAAAUACUCAUAUACAUU---CA--UAC-AUAUGCUAUAUCCUAUAUGCUAUAUGCUCAUGAAGCUUAGGCUAU
.........-((((((((((((.....................((((((((.---..--...-..))).))))).......((.....))..)))))))))))).... ( -15.10)
>DroSec_CAF1 175547 102 - 1
UAUCCUUAU-CUUAACCUUUAUCCCUAUACCCAU-AAAUACUCAUAUACAUA---CAUAUAC-AUAUGCUAUGUGCUACAUGCUAUAUGCUCAUGAAGCUUAGGCUAU
.........-.............((((.......-............(((((---((((...-.)))).)))))(((.(((((.....))..))).))).)))).... ( -13.10)
>DroSim_CAF1 181514 103 - 1
UAUCCUUAU-CUUAACCUUUAUCCCUAUACCCAUUAAAUACUCAUAUACAUA---CAUAUAC-AUAUGCUAUAUGCUACAUGCUAUAUGCUCAUGAAGCUUAGGCUAU
.........-(((((.((((((....................((((((((((---.......-.)))).))))))......((.....))..)))))).))))).... ( -11.80)
>DroEre_CAF1 185481 108 - 1
UAUCUUUAUCCCUAAACCUUAUAUUUAUACACAAUACAUAUUCAUAUGCAUAUGCCAUAUGCUGUAUGCUGUAUGCUAAAUGCUAUAUGCUCAUGAAGCUUAGGCUAU
..........(((((..........((((((..(((((....(((((((....).)))))).)))))..))))))......(((.(((....))).)))))))).... ( -18.50)
>consensus
UAUCCUUAU_CUUAACCUUUAUCCCUAUACCCAUUAAAUACUCAUAUACAUA___CAUAUAC_AUAUGCUAUAUGCUACAUGCUAUAUGCUCAUGAAGCUUAGGCUAU
..........(((((.((((((....................((((((((((............)))).))))))......((.....))..)))))).))))).... ( -9.45 =  -9.45 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:22 2006