Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,189,787 – 26,189,889 |
Length | 102 |
Max. P | 0.838550 |
Location | 26,189,787 – 26,189,889 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 92.63 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -24.96 |
Energy contribution | -25.20 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.07 |
Mean z-score | -1.21 |
Structure conservation index | 0.97 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26189787 102 - 27905053 AAAAUCGUAUUCCUUCCGAAGGUCAACACACACAGGGAUACAAAUACAUUUUCAAUGUUCACAGGGUAUGAGCAAAUUGGGGAUGUCACAGUUUUGGCUGUC ......((((((((.......(....)......))))))))....(((((..(((((((((.......))))))..)))..))))).(((((....))))). ( -25.12) >DroSec_CAF1 171672 102 - 1 AAAAUCGUAUUCCUUUCGAAGGGCAACUCACAGAGGGAUACAAAUACAUUUUCAAUGUUCACAGGGUAUGAGCAAAUUGGGGAUGUCACAGUUUUGGCUGUC ......((((((((((.(..((....))..)))))))))))....(((((..(((((((((.......))))))..)))..))))).(((((....))))). ( -31.60) >DroSim_CAF1 177635 102 - 1 AAAAUCGUAUUCCUUCCGAAGGGCAACUCACACAGGGAUACAAAUACAUUUUCAAUGUUCACAGGGUAUGAGCAAAUUGGGGAUGUCACAGUUUUGGCUGUC ......((((((((......((....)).....))))))))....(((((..(((((((((.......))))))..)))..))))).(((((....))))). ( -28.60) >DroEre_CAF1 181515 99 - 1 AAAAUCGUAAUCCUUUCGAAGGACAACUCAC--AGGGUUACAAAUACAUUUUCAAUGUUCACAGGGCAUGAGCAAAUUGGGGAGGUCACAGUU-UGGCUGUC ......((((((((...((.(.....)))..--)))))))).......((..(((((((((.......))))))..)))..))(((((.....-)))))... ( -21.00) >DroYak_CAF1 182330 99 - 1 AAAAUCGCAAUCCUUUCGAAGGACAACUCAC--AGGGAUGCAAAUACAUUUUCAAUGUUCACAGGGGUUGAGCAAAUGGGGGAUGUCACAGUU-UGGCUGUC ......(((.(((((((....))........--))))))))....(((((..(..((((((.......))))))....)..))))).((((..-...)))). ( -22.70) >consensus AAAAUCGUAUUCCUUUCGAAGGACAACUCACA_AGGGAUACAAAUACAUUUUCAAUGUUCACAGGGUAUGAGCAAAUUGGGGAUGUCACAGUUUUGGCUGUC ......((((((((.....((.....)).....))))))))....(((((..(((((((((.......))))))..)))..))))).(((((....))))). (-24.96 = -25.20 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:21 2006