Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,186,332 – 26,186,428 |
Length | 96 |
Max. P | 0.505354 |
Location | 26,186,332 – 26,186,428 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.62 |
Mean single sequence MFE | -42.97 |
Consensus MFE | -31.65 |
Energy contribution | -31.38 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.25 |
Mean z-score | -1.82 |
Structure conservation index | 0.74 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26186332 96 - 27905053 GCGGUGCCGAGUAAUCGAUGGCGGCAUUGUAGAGCGGCUGCUUCGGUGGCUG----CUUGCUGGCG------A--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG (((((((((.((.....))..)))))))))..(((((((((....))(((((----(..((.((((------(--(...)))))))).))))))------------...))))))).... ( -44.50) >DroSec_CAF1 168340 96 - 1 GCGGUGCCGAGUAAUCGAUGGCGGCAUUGUAGAGCGGCUGCUUCGGUGGCUG----CUUGCUGGCG------A--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG (((((((((.((.....))..)))))))))..(((((((((....))(((((----(..((.((((------(--(...)))))))).))))))------------...))))))).... ( -44.50) >DroSim_CAF1 174230 96 - 1 GCGGUGCCGAGUAAUCGAUGGCGGCAUUGUAAAGCGGCUGCUUCGGUGGCUG----CUUGCUGGCG------A--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG (((((((((.((.....))..)))))))))..(((((((((....))(((((----(..((.((((------(--(...)))))))).))))))------------...))))))).... ( -44.40) >DroEre_CAF1 178111 96 - 1 GCGGCGCCGAGUAAUCGAUGGCGGCAUUGAAGAGCGGCUGCUUUGGUGGCUG----CUUGCCGGCG------A--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG (((((.(((....((((.((.(((((......((((((..(....)..))))----))))))).))------.--))))(((((....))))))------------))..)))))..... ( -44.10) >DroYak_CAF1 178875 102 - 1 GCGGUGCCGAAUAAUCGAUGGCGGCAUUGUAGAGCGGCUGCUUUGGUGGCUG----CUUGCUGGCGAUGGCGA--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG (((((((((.((.....))..))))))))).(((((((..(....)..))))----))).....(((((((..--(.(.(((((....))))))------------.)..)))))))... ( -44.30) >DroAna_CAF1 178600 114 - 1 AGGGUGCCGAAUAAUCGAUGGCGGCAUUGUACAGAGCUUGCUUCGGUUGCUUGGAAAUCGCUGACG------AGCUGCCGUUGCUGUUGCAACUAUUGGAACCAUUUGAGGCCGUUGGAG ..(((.((((.........((((((.((((.((((((..((....)).)))..(....).))))))------)))))))(((((....)))))..)))).)))................. ( -36.00) >consensus GCGGUGCCGAGUAAUCGAUGGCGGCAUUGUAGAGCGGCUGCUUCGGUGGCUG____CUUGCUGGCG______A__UGGUGUUGCUGCUGCAGCC____________GGAGGCCGUUGGAG (((((((((.........((.(((((........(((((((....)))))))......))))).)).........))))(((((....))))).................)))))..... (-31.65 = -31.38 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:20 2006