Locus 9838

Sequence ID 3R_DroMel_CAF1
Location 26,174,538 – 26,174,628
Length 90
Max. P 0.756495
window15709

overview

Window 9

Location 26,174,538 – 26,174,628
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 73.12
Mean single sequence MFE -20.58
Consensus MFE -8.50
Energy contribution -8.46
Covariance contribution -0.04
Combinations/Pair 1.18
Mean z-score -1.85
Structure conservation index 0.41
SVM decision value 0.49
SVM RNA-class probability 0.756495
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26174538 90 + 27905053
GCAUCUGUUGCAUAAUAAGUUCGUAUUUUCUUCAGUGUAGUUUAGUCCUGCAUUUUAAGUGCUGGCAGUGGCUCCUUCUAGGCCACCUUC
(((.....))).......((..((((((.....(((((((.......)))))))..))))))..)).((((((.......)))))).... ( -22.00)
>DroSec_CAF1 156781 74 + 1
GCAUCUGU--------------GCAUUUUCUUCAGUGUAGUUU--UCCUGCAUUUUAAGUGCUGGCACUGGCUCCUUCUAGGCCACCUUU
........--------------((((((.....(((((((...--..)))))))..))))))((((.((((......))))))))..... ( -19.00)
>DroSim_CAF1 162716 74 + 1
GCAUCUGU--------------GCAUUUUCUUCAGUGUAGUUU--UCCUGCAUUUUAAGUGCUGGCACUGGCUCCUUCUAGGCCACCUUC
........--------------((((((.....(((((((...--..)))))))..))))))((((.((((......))))))))..... ( -19.00)
>DroEre_CAF1 166549 77 + 1
ACAUCUGCUGCCAAGCGAGGCUGUGUUUUCUUCAGUGUGGCUC--UCCUGCAUCUUAAGUGCUUGCAG-----------AGGCCACCUUC
......((.(((......))).)).........((.(((((.(--((.((((...........)))))-----------))))))))).. ( -22.20)
>DroYak_CAF1 166799 77 + 1
ACAUCUGUUGCCAAAUGCGGCUGUAUUUUCUUCAGUGUGGCUU--UCCUGCAUUUUAAGUGCUUGCAG-----------AGGCCACCUUC
(((.((((........)))).))).........((.(((((((--..(((((...........)))))-----------))))))))).. ( -20.70)
>consensus
GCAUCUGUUGC__A____G___GUAUUUUCUUCAGUGUAGUUU__UCCUGCAUUUUAAGUGCUGGCAGUGGCUCCUUCUAGGCCACCUUC
......................((((((.....(((((((.......)))))))..))))))((((...............))))..... ( -8.50 =  -8.46 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:17 2006