Locus 9837

Sequence ID 3R_DroMel_CAF1
Location 26,170,136 – 26,170,227
Length 91
Max. P 0.652415
window15708

overview

Window 8

Location 26,170,136 – 26,170,227
Length 91
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 82.79
Mean single sequence MFE -29.72
Consensus MFE -19.83
Energy contribution -21.58
Covariance contribution 1.75
Combinations/Pair 1.10
Mean z-score -2.06
Structure conservation index 0.67
SVM decision value 0.25
SVM RNA-class probability 0.652415
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26170136 91 + 27905053
AAUGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGCCAGCGACGUCGACUGC--GGCAGCGACUGCAAUUGCAAUGGCACACUCAAA
..(((((....((.(((((((((((...((((.((((.(((....))).).)))..))--)).)))))))))))..))..)))))........ ( -35.70)
>DroPse_CAF1 163541 76 + 1
AAUGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGGCAGUGGCAGCGACUGCAUGGGAGCGAGCGCCAUU-----------------
................(((.(((((..((((((.(((....)).).))).((....))..)))))))).)))....----------------- ( -29.30)
>DroSec_CAF1 152542 83 + 1
AAUGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGACUGCGACGUCGACUGC--GGCAGCGACUGCAAUUGC--------ACUCAAA
.......((..((.(((((((((((...((((.((((.(((....))).).)))..))--)).)))))))))))..))--------..))... ( -30.70)
>DroSim_CAF1 158507 83 + 1
AAUGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGACUGCGACGUCGACUGC--GGCAGCGACUGCAAUUGC--------ACUCAAA
.......((..((.(((((((((((...((((.((((.(((....))).).)))..))--)).)))))))))))..))--------..))... ( -30.70)
>DroEre_CAF1 162321 72 + 1
AAUGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUGCGACUGCGACGUCGACUGC--GGCAGCGACU-------------------GCAA
..............(((((((((((...((((.(((.((((....)).)).)))..))--)).)))))))-------------------)))) ( -27.60)
>DroYak_CAF1 162270 83 + 1
AAUGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGACUGCGACGUCGACUGC--GGCAGCAAUUGCAAUUGC--------ACUGCAA
..((.(((...((((((((((((.......((.((((.......)))).)))))))))--)).)))...(((....))--------)))))). ( -24.31)
>consensus
AAUGUCAGAUAGUUUUGCGGUCGCUAACCCGCCUCGCUUCGACUGCGACGUCGACUGC__GGCAGCGACUGCAAUUGC________ACUCAAA
..............(((((((((((.....(((..((.(((((......)))))..))..))))))))))))))................... (-19.83 = -21.58 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:16 2006