| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,169,106 – 26,169,197 |
| Length | 91 |
| Max. P | 0.701101 |
| Location | 26,169,106 – 26,169,197 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 78.11 |
| Mean single sequence MFE | -25.48 |
| Consensus MFE | -18.16 |
| Energy contribution | -18.36 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26169106 91 - 27905053 GUUGCACAUGCCACUCGGCUUGGGGCACUCCCACUCCC--------CUUCAGC----------UCCCUUUAGCCAACACAAAAGCUCCACCUUGUGCGAUGGCCAAAUU .........((((.((((((.(((((............--------.....))----------.)))...))))..(((((..........))))).))))))...... ( -21.63) >DroSec_CAF1 151529 100 - 1 GUUGCACAUGCCACUUGGCUUGGGGCACUCCCACUCCC--------CUUCAGCCCGCGUCCGUUCCCUUUGGCCACCA-AAAAGCUCCACCUUGUGCGAUGGCCAAAUU ...((.((.(((....))).))((((............--------.....))))))..........(((((((((((-..(((......))).)).).)))))))).. ( -25.63) >DroSim_CAF1 157509 97 - 1 GUUGCACAUGCCACU--GCUUGGGGCACUCCCACUCCC--------CUUCAGCCCGCGUCCGCUCCCUUUGGCCACCA-A-AAGCUCCACCUUGUGCGAUGGCCAAAUU ...((..((((..((--(...((((..........)))--------)..)))...))))..))....(((((((((((-.-(((......))).)).).)))))))).. ( -25.40) >DroEre_CAF1 161277 93 - 1 GUUGCACAUGCCUCUUGGCUUGGGGCACUCCCACUCCCACUGCCCCCC--CUUC-------------UUUGGCCACCA-AAAGGCUCCACCUUGUGCGAUGGCCAAAUU .........(((....)))..((((((.............))))))..--....-------------(((((((((((-.((((.....)))).)).).)))))))).. ( -30.22) >DroYak_CAF1 161206 92 - 1 GUUGCACAUGCCCCUCGGCUUGGGGCACUCCCAC--CCACUCCCCCCCUCAGCC-------------CGCGUCCACCA-A-AGGCUCCACCUUGUGCGAUGGCCAAAUU ((((((((((((((.......)))))).......--..............((((-------------...........-.-.))))......))))))))......... ( -24.52) >consensus GUUGCACAUGCCACUCGGCUUGGGGCACUCCCACUCCC________CUUCAGCC_________UCCCUUUGGCCACCA_AAAAGCUCCACCUUGUGCGAUGGCCAAAUU ((((((((.(((....))).((((((.........................................................))))))...))))))))......... (-18.16 = -18.36 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:15 2006