Locus 9835

Sequence ID 3R_DroMel_CAF1
Location 26,165,719 – 26,165,809
Length 90
Max. P 0.537715
window15706

overview

Window 6

Location 26,165,719 – 26,165,809
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 90.93
Mean single sequence MFE -28.54
Consensus MFE -21.36
Energy contribution -21.56
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.75
SVM decision value 0.01
SVM RNA-class probability 0.537715
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26165719 90 + 27905053
ACUUUCAAUAAAAGUUGCCCGUCGCCGUGGGCUUUUGCGCGCGAAAGAGAGAGGGCAGCUGUGGCGCAGAAAGAGACAGCGUAUGGGAAU
..(..((.....((((((((.((..((((.((....)).))))...))....))))))))...((((...........)))).))..).. ( -29.70)
>DroSec_CAF1 148178 87 + 1
ACUUUCAAUAAAAGUUGCCCGUCGCCGUGGGCU-UUGCGCGCGAAAGA--GAGGGAAGCUGUGGCGCUGAAAGAGACAGUGAAUGGGAUU
(((((.....)))))..((((((((((..(.((-((.(.(.(....).--).).)))))..))))((((.......))))).)))))... ( -27.00)
>DroSim_CAF1 154147 87 + 1
ACUUUCAAUAAAAGUUGCCCGUCGCCGUGGGCU-UUGCGCGCGAAAGA--GAGGGAAGCUGUGGCGCUGAAAGCGAUAGCGAAUGUGAUU
((.(((...........(((.((..((((.((.-..)).))))...))--..)))..(((((.((.......)).)))))))).)).... ( -25.70)
>DroEre_CAF1 157911 87 + 1
ACUUUCAAUAAAAGUUGCCCGUCGCCGUGGGCU-UUGCGCGCGAGAGA--GAGGGAUGCUGCAGCGCGGAAAGAGACAGCGAAUGGGAAU
(((((.....)))))..((((((((.((...((-((.(((((...((.--........))...))))).))))..)).))).)))))... ( -27.20)
>DroYak_CAF1 157611 87 + 1
ACUUUCAAUAAAAGUUGCCCGUCGCCGUGGGCU-UUGCUCGCGAAAGA--GAGGGAAGCUGAUGCUCGGAAAGAGACAGCGAAUGGGAAU
(((((.....)))))..(((((((((((.((((-((.(((.(....).--))).)))))).)))(((.....)))...))).)))))... ( -33.10)
>consensus
ACUUUCAAUAAAAGUUGCCCGUCGCCGUGGGCU_UUGCGCGCGAAAGA__GAGGGAAGCUGUGGCGCGGAAAGAGACAGCGAAUGGGAAU
.(((((......((((.(((.((..((((.((....)).))))...))....))).))))........)))))................. (-21.36 = -21.56 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:15 2006