| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,154,096 – 26,154,195 |
| Length | 99 |
| Max. P | 0.781217 |
| Location | 26,154,096 – 26,154,195 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.29 |
| Mean single sequence MFE | -33.05 |
| Consensus MFE | -13.64 |
| Energy contribution | -16.17 |
| Covariance contribution | 2.53 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26154096 99 + 27905053 AAAAU-CGAGGCGCAG---UGGCAGGAGCAGUUGGAGGA------GCAGCUGGAGGAGCUGCUUCGGUAGUUC---AACUGCCAUUCAUCAUACGCACUGUUGUGUUCGAGC ....(-((((..(.((---((((((...((((((.....------.))))))...(((((((....)))))))---..)))))))))..)....((((....)))))))).. ( -39.00) >DroSec_CAF1 136747 105 + 1 AAAAU-CGAGGAGCAG---UGGCAGGAGCAGCUGGAGGAACUGGAAGAGCUGGAGGAGCUCCUUCGGUAGUUC---AACUGCCAUUCAUCAUACGCACUGUUGUGUUCGAGC ....(-(((.((..((---((((((((((.(((((((((.(.....).(((.....)))))))))))).))))---..))))))))..))....((((....)))))))).. ( -37.10) >DroSim_CAF1 142589 105 + 1 AAAAU-CGAGGAGCAG---UGGCAGGAGCAGCUGGAGAAACUGGAGGAGCUGGAGGAGCUCCUUCGGUAGUUC---AACUGCCAUUCAUCAUACGCACUGUUGUGUUCGAGC ....(-(((.((..((---((((((..(.((((......((((((((((((.....)))))))))))))))))---..))))))))..))....((((....)))))))).. ( -41.10) >DroEre_CAF1 146174 92 + 1 AAAUU-CGAGGAGCAGCUGAA---GGAGCUGA-------------GGAGCUGGAGGAGCUCCUUUGGUAGUUC---CACUGCCAUUCAUCAUACGCACUGUUGUGUUCGAGC ...((-((((((((.((..((---((((((..-------------...........))))))))..)).))))---).................((((....))))))))). ( -32.92) >DroWil_CAF1 184465 90 + 1 CACUUAUGUGGAGCUAGAGAU---------GA-------------AUGUAUGCAUGUUGUCAAAAGGUAGUUCAGCAACUGUCAUUCAUCAUACGCACUGUUGUACUUUUAU (((....)))..((((..(((---------((-------------(((...(((.(((((..((......))..)))))))))))))))).)).))................ ( -18.00) >DroYak_CAF1 144970 93 + 1 AAAAU-CGAGGAGCAGGAGUAGCAGGAGCAGA-------------UG--GAGGAGGAGCUCCUUCAGUAGUUC---AACUGCCAUUCAUCAUACGCACUGUUGUGUUCGAGC ....(-(((.((....((((.((((((((...-------------((--((((((...))))))))...))))---..)))).)))).))....((((....)))))))).. ( -30.20) >consensus AAAAU_CGAGGAGCAG___UGGCAGGAGCAGA_____________GGAGCUGGAGGAGCUCCUUCGGUAGUUC___AACUGCCAUUCAUCAUACGCACUGUUGUGUUCGAGC ..........(((((....((((((..((......................(((((....)))))(((((((....)))))))...........)).))))))))))).... (-13.64 = -16.17 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:11 2006