| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,152,125 – 26,152,217 |
| Length | 92 |
| Max. P | 0.762133 |
| Location | 26,152,125 – 26,152,217 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 74.70 |
| Mean single sequence MFE | -24.86 |
| Consensus MFE | -14.02 |
| Energy contribution | -15.02 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.762133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26152125 92 - 27905053 UCCGCCCCAAUGGCAUUAGAAAAUGCGAUUCAUGGGUCAAACCCAGUCGAAAGUCGAAACUCAUUGGGAAUUCAGGCGACCUGCUCUCCUCU------------- .....((((((((((((....)))))..(((.((((.....))))(.(....).))))...)))))))....((((...)))).........------------- ( -26.50) >DroPse_CAF1 146082 96 - 1 ---GCCCCCACCUCUUUC----CCCCGAUUCAUGGGGCAAACCCAGUGGC--GACGCCACUCACUGGGAAUUCACGAACGCAGCCUACAUUCCCACGUUCCCCCU ---(((((....((....----....)).....)))))...((((((((.--(....).).))))))).......(((((...............)))))..... ( -25.26) >DroSec_CAF1 134838 85 - 1 UCCGCCCCAAUGGCUUUGGAAAAUGCGAUUCAUGGGUCAAACCCAGGCGAAAGUCGAAACUCAUUGGGAAUUCAGGCGCCCAGCU-------------------- .....(((((((((.((....)).))..(((.((((.....))))(((....))))))...)))))))......(((.....)))-------------------- ( -27.50) >DroSim_CAF1 140677 85 - 1 UCCGCCCCAAUGGCUUUGGAAAAUGCGAUUCAUGGGUCAAACCCAGGCGAAAGUCGAAACUCAUUGGGAAUUCAGGCGCCCAGCU-------------------- .....(((((((((.((....)).))..(((.((((.....))))(((....))))))...)))))))......(((.....)))-------------------- ( -27.50) >DroEre_CAF1 144193 85 - 1 UUCAACCCAAUGGCAUUAGAACAUGCUAUUCAUGGUUCAAACCCAGUCGAAAGUCGAAACUCAUUGGGAAUUCAGGCGCCCAGCU-------------------- .....(((((((((((......))))..(((.(((.......)))(.(....).))))...)))))))......(((.....)))-------------------- ( -20.20) >DroYak_CAF1 142905 85 - 1 UUCGCCCCAAUGCCAUGAGAAAAUGCUAUUCAUGGGUCAAACCCAGUCGAAAGUCGAAACUCAUUGGGAAUUCAGGCGCCCCGUU-------------------- ..((((..(((.(((((((.............((((.....))))(.(....).)....)))).)))..)))..)))).......-------------------- ( -22.20) >consensus UCCGCCCCAAUGGCAUUAGAAAAUGCGAUUCAUGGGUCAAACCCAGUCGAAAGUCGAAACUCAUUGGGAAUUCAGGCGCCCAGCU____________________ .....(((((((....................((((.....))))(.(....).)......)))))))..................................... (-14.02 = -15.02 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:10 2006