| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,142,513 – 26,142,608 |
| Length | 95 |
| Max. P | 0.925403 |
| Location | 26,142,513 – 26,142,608 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.28 |
| Mean single sequence MFE | -21.18 |
| Consensus MFE | -17.08 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26142513 95 + 27905053 UUUAUCCC-----AC----CAGUUUGCUUGCAACAUUUGCAGCACACUUUGGUGUUGCAGUCAUAACGAUUCUUAAGCUGGCUUUAUGCUGGCCAUUAUCGAAG--- .......(-----((----((((.((((.(((.....))))))).))..)))))............((((......((..((.....))..))....))))...--- ( -25.30) >DroSec_CAF1 132797 91 + 1 UUUAUCCC-----AC----CAA----CUUGCAACAUUUGCUGCACACUUUGGUGUUGCAGUCAUAACGAUUCCUAAGCUGGCUUUAUGCUGGCCAUUAUCGAAG--- ........-----..----...----............(((((((((....))).)))))).....((((......((..((.....))..))....))))...--- ( -22.30) >DroSim_CAF1 138623 91 + 1 UUUAUACC-----AC----CAA----CUUGCAACAUUUGCUGCACACUUUGGUGUUGCAGUCAUAACGAUUCCUAAGCUGGCUUUAUGCUGGCCAUUAUCGAAG--- ........-----..----...----............(((((((((....))).)))))).....((((......((..((.....))..))....))))...--- ( -22.30) >DroEre_CAF1 142033 84 + 1 UUUAUCCCUUGCAAC----CAA----CUUGCAACAUU------------UGGUGUUGCAGUCAUAACGAUUGCUAAGCUGACUUUAUGCUGGCCAUUAUCGCAG--- .........(((...----...----.(((((((((.------------..))))))))).......(((.((((.((.........))))))....)))))).--- ( -18.20) >DroYak_CAF1 140734 99 + 1 -UUAUCCCUUGCAACCAACCAA----CUUGCAACAUUUGCUGCAUACUUUGGUGUUGCAGUCAUAACGAUUCCUAAGCUGACUUUAUGCUGGCCAUUAUCGAAG--- -.......(((((((..(((((----..((((.(....).))))....))))))))))))......((((......(((..(.....)..)))....))))...--- ( -21.30) >DroAna_CAF1 143987 78 + 1 UCCUUUC-------------------CUUGCAACAUUU----------UCGGUGUUGCAGUCAUAACGGUUCUUAAGCUCACUUUAUGUUGGCCAUUACAGAACAAG .......-------------------.(((((((((..----------...)))))))))........(((((((((((.((.....)).)))..))).)))))... ( -17.70) >consensus UUUAUCCC_____AC____CAA____CUUGCAACAUUUGCUGCACACUUUGGUGUUGCAGUCAUAACGAUUCCUAAGCUGACUUUAUGCUGGCCAUUAUCGAAG___ ...........................((((((((((.............))))))))))......((((......((((((.....))))))....))))...... (-17.08 = -17.30 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:09 2006