Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,164,355 – 3,164,475 |
Length | 120 |
Max. P | 0.760496 |
Location | 3,164,355 – 3,164,475 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.00 |
Mean single sequence MFE | -44.10 |
Consensus MFE | -40.58 |
Energy contribution | -40.70 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.22 |
Structure conservation index | 0.92 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3164355 120 - 27905053 AAGGUGCAUGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUAGCAAGAGUCCGAGCCAUCACCACGUCGGUGCCAUAUUAGUCACAGCGGCGGAACGGCCACCGAUGUCUAGGUGGGC ..((((.(((((((........((((((....))))))(((.(......).))))))))))))))(((((((((((......(((.....))).....)).))))))))).......... ( -46.90) >DroSec_CAF1 12397 120 - 1 AAAGUGCAUGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUAGCAAGAGUCCAAGCCAUCACCACGUCGGUGCCAUAUUAGUCACAGCGGCGGAACGGCCACCGAUGUCUAGGUGGGC .....((.((((((........((((((....))))))(((.(......).)))))))))((((((((((((((((......(((.....))).....)).)))))))))...))))))) ( -44.30) >DroSim_CAF1 14641 120 - 1 AAAGUGCAUGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUAGCAAGAGUCCAAGCCAUCACCACGUCGGUGCCAUAUUAGUCACAGCGGCGGAACGGCCACCGAUGUCUAGGUGGGC .....((.((((((........((((((....))))))(((.(......).)))))))))((((((((((((((((......(((.....))).....)).)))))))))...))))))) ( -44.30) >DroEre_CAF1 4099 120 - 1 AAAGUGCACGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUACUGUGAGUCCAAGGCAUCGCCGCGUCGGUGCCAUAUUAGUCACAACGGCGGAACGGCCACCGAUGUCUAGGUGGGC .....((..(.((((.((((((((((.(((....)))...))))))))))...)))).).((((((((((((((((......(((.....))).....)).)))))))))...))))))) ( -43.30) >DroYak_CAF1 13670 120 - 1 AAAGCGCUCGGCUUGAUUAUAGUGCUGGUUGGCCAGUAGGAGUACCAUGAGUCCAAGCCAUAACCACGUCGGUGCCAUAUUAGUCACAACGGCGGAACAGCCACCGAUGUCUAGGUGGGC .....((((((((((.((((..((((((....))))))((....))))))...))))))...(((((((((((.........((....))(((......)))))))))))...))))))) ( -41.70) >consensus AAAGUGCAUGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUAGCAAGAGUCCAAGCCAUCACCACGUCGGUGCCAUAUUAGUCACAGCGGCGGAACGGCCACCGAUGUCUAGGUGGGC .....((..(((((........((((((....))))))(((.(......).)))))))).((((((((((((((((......(((.....))).....)).)))))))))...))))))) (-40.58 = -40.70 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:29 2006