Locus 9828

Sequence ID 3R_DroMel_CAF1
Location 26,135,699 – 26,135,803
Length 104
Max. P 0.998696
window15697

overview

Window 7

Location 26,135,699 – 26,135,803
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 90.87
Mean single sequence MFE -18.53
Consensus MFE -16.85
Energy contribution -16.45
Covariance contribution -0.40
Combinations/Pair 1.11
Mean z-score -2.20
Structure conservation index 0.91
SVM decision value 3.19
SVM RNA-class probability 0.998696
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26135699 104 - 27905053
ACAAUUGAAAUCAACUUACACUUGAGCCAACCAUCUCAUCUCAUCUCCCUUACUCCCACACGACCAUCAAAUUGUUUGGCUGGGCAUUACACCGAGUGUAAACA
...............(((((((((((........))).................((((..(((.((......)).)))..)))).........))))))))... ( -17.30)
>DroSec_CAF1 126174 100 - 1
ACAAUUGAAAUCAACUUACACUUGAGCCAACCAUCUCAU--CAUCUCCCUUACUCCCACA--ACCAUGAAAUUGUUUGGCUGGGCAUUACACCGAGUGUAAACA
...............((((((((.((((((.((..((((--...................--...))))...)).))))))((........))))))))))... ( -18.95)
>DroSim_CAF1 132071 100 - 1
ACAAUUGAAAUCAACUUACACUUGAGCCAACCAUCUCAU--CAUCUCCCUUACUCCCACA--ACCAUGAAAUUGUUUGGCUGGGCAUUACACCGAGUGUAAACA
...............((((((((.((((((.((..((((--...................--...))))...)).))))))((........))))))))))... ( -18.95)
>DroEre_CAF1 134908 92 - 1
ACAAUUGAAAUCAACUUACACUUGAGCCGGCCAUA----------UCUCCUACUCCCACA--ACCAUGAAAUUGUUUGGCUGGGCAUUACACCGAGUGUAAACA
...............(((((((((..(((((((..----------...............--..............)))))))(.....)..)))))))))... ( -18.38)
>DroYak_CAF1 133648 92 - 1
ACAAUUGAAAUCAACUUACACUUGAGCCAGCCAUC----------UCUCUUACUCCCACA--ACCAUGAAAUUGUUUGGCUGGGCAUUACACCGAGUGUAAACA
...............(((((((((..(((((((..----------...............--..............)))))))(.....)..)))))))))... ( -19.08)
>consensus
ACAAUUGAAAUCAACUUACACUUGAGCCAACCAUCUCAU__CAUCUCCCUUACUCCCACA__ACCAUGAAAUUGUUUGGCUGGGCAUUACACCGAGUGUAAACA
...............((((((((.((((((.((.......................................)).))))))((........))))))))))... (-16.85 = -16.45 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:07 2006