| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,133,432 – 26,133,530 |
| Length | 98 |
| Max. P | 0.814546 |
| Location | 26,133,432 – 26,133,530 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 87.41 |
| Mean single sequence MFE | -21.91 |
| Consensus MFE | -16.18 |
| Energy contribution | -16.18 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26133432 98 + 27905053 CAUCUCGAUCUGGAGUGCGAGAUCCGAUCAAUAAAAUAAGCAAACAAUAAAGAGACCGGGUCGAGCACAUUCAUUCAAUAUGAAUAGCGAUCUGAACG ......((((....((((..((((((.((........................)).))))))..))))((((((.....))))))...))))...... ( -24.26) >DroSec_CAF1 124021 92 + 1 CAUCUCGAUCUGGAGUGCGAGAUCCGAUCAAUAAAAUAAGCAAACAAUAAA--GACCGGGUCGAGCACAU----UCAAUAUGAAUAGCGAUCUGAACG ......((((....((((..((((((.((......................--)).))))))..))))((----((.....))))...))))...... ( -22.15) >DroSim_CAF1 129918 92 + 1 CAUCUCGAUCUGGAGUGCGAGAUCCGAUCAAUAAAAUAAGCAAACAAUAAA--GACCGGGUCGAGCACAU----UCAAUAUGAAUAGCGAUCUGAACG ......((((....((((..((((((.((......................--)).))))))..))))((----((.....))))...))))...... ( -22.15) >DroEre_CAF1 132759 81 + 1 CAUCUCGAUCUGGAGUGCGAGAUCCGAUCAAUAAAAUAAGCAAACAAUAAA--GAGCGGGUCGAGCACAU----UCGAUCUGAACGA----------- ......((((.(((((((..((((((.((......................--)).))))))..)))).)----)))))).......----------- ( -21.95) >DroYak_CAF1 131501 85 + 1 CAUCUCGAUCUGGAGUGCGAGAUCCGAUCAAUAAAAUAAGCAAACAAUAAA--GAGCGGGUCGAGCACAU----UCGAUAUAAACGGCGAU------- .(((((((((.(((((((..((((((.((......................--)).))))))..)))).)----))))).....))).)))------- ( -19.05) >consensus CAUCUCGAUCUGGAGUGCGAGAUCCGAUCAAUAAAAUAAGCAAACAAUAAA__GACCGGGUCGAGCACAU____UCAAUAUGAAUAGCGAUCUGAACG ..............((((..((((((.((........................)).))))))..)))).............................. (-16.18 = -16.18 + -0.00)
| Location | 26,133,432 – 26,133,530 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 87.41 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -16.56 |
| Energy contribution | -16.76 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.628052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26133432 98 - 27905053 CGUUCAGAUCGCUAUUCAUAUUGAAUGAAUGUGCUCGACCCGGUCUCUUUAUUGUUUGCUUAUUUUAUUGAUCGGAUCUCGCACUCCAGAUCGAGAUG ((((..((((...((((((.....))))))((((..((.((((((....((..((......))..))..)))))).))..))))....))))..)))) ( -24.40) >DroSec_CAF1 124021 92 - 1 CGUUCAGAUCGCUAUUCAUAUUGA----AUGUGCUCGACCCGGUC--UUUAUUGUUUGCUUAUUUUAUUGAUCGGAUCUCGCACUCCAGAUCGAGAUG ((((..((((...((((.....))----))((((..((.((((((--..((..((......))..))..)))))).))..))))....))))..)))) ( -24.70) >DroSim_CAF1 129918 92 - 1 CGUUCAGAUCGCUAUUCAUAUUGA----AUGUGCUCGACCCGGUC--UUUAUUGUUUGCUUAUUUUAUUGAUCGGAUCUCGCACUCCAGAUCGAGAUG ((((..((((...((((.....))----))((((..((.((((((--..((..((......))..))..)))))).))..))))....))))..)))) ( -24.70) >DroEre_CAF1 132759 81 - 1 -----------UCGUUCAGAUCGA----AUGUGCUCGACCCGCUC--UUUAUUGUUUGCUUAUUUUAUUGAUCGGAUCUCGCACUCCAGAUCGAGAUG -----------.((((..((((..----..((((..((.(((.((--..((..((......))..))..)).))).))..))))....))))..)))) ( -20.80) >DroYak_CAF1 131501 85 - 1 -------AUCGCCGUUUAUAUCGA----AUGUGCUCGACCCGCUC--UUUAUUGUUUGCUUAUUUUAUUGAUCGGAUCUCGCACUCCAGAUCGAGAUG -------.....(((((..(((..----..((((..((.(((.((--..((..((......))..))..)).))).))..))))....)))..))))) ( -17.40) >consensus CGUUCAGAUCGCUAUUCAUAUUGA____AUGUGCUCGACCCGGUC__UUUAUUGUUUGCUUAUUUUAUUGAUCGGAUCUCGCACUCCAGAUCGAGAUG ................(((.((((......((((..((.((((((....((..((......))..))..)))))).))..))))......)))).))) (-16.56 = -16.76 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:04 2006