Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,132,163 – 26,132,255 |
Length | 92 |
Max. P | 0.963958 |
Location | 26,132,163 – 26,132,255 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 72.36 |
Mean single sequence MFE | -13.70 |
Consensus MFE | -4.80 |
Energy contribution | -4.83 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.14 |
Mean z-score | -2.03 |
Structure conservation index | 0.35 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26132163 92 + 27905053 AAUAUUAUAACCAAUAUAUU-AACCAAUUUAUAUUCUCUAAAUUAGAAGAGAAUAAAAGCAGAGCUUACCUCUGCUU---ACCUUCGCCAACAAAG ....................-..........((((((((........)))))))).((((((((.....))))))))---................ ( -18.50) >DroSec_CAF1 122724 83 + 1 AAUAUAA--------AGAUU-AACCAAUUUAUAUUCUCUAAAUUAUGA-AAAAUAAAAGCAGAGCUUACCUCCGCUU---ACCUUCGCCAACAAAG (((((((--------(....-......)))))))).............-.......((((.(((.....))).))))---................ ( -7.80) >DroSim_CAF1 128619 83 + 1 AAUAUAA--------AGAUU-AACCAAUUUAUAUUCUCUAGAUUAUGA-AAAAUAAAAGCAGAGCUUACCUCCGCUU---ACCUUCGCCAACAAAG .......--------.....-......((((((.((....)).)))))-)......((((.(((.....))).))))---................ ( -9.60) >DroEre_CAF1 131407 84 + 1 CAAGUAA--------UGUUUAAACCAAUUUAAAUCCUCUAUAUCAGAG-AAAAUAAAAGCUGAGCUUACCACUGCUU---ACCUUCGCCAACAAAG .......--------((((................((((.....))))-.......(((.(((((........))))---).)))....))))... ( -9.80) >DroYak_CAF1 130173 84 + 1 AAAAUAU--------AGUUUAAAUCAAUACGAAGCUUUUAAAUCAGAG-AAAAUAAAAGCAGAGCUUACCUCUGCUU---ACCUUCGCCAACAAAG .......--------..............(((((((((......))))-.......((((((((.....))))))))---..)))))......... ( -15.50) >DroAna_CAF1 134692 77 + 1 GAUGGGA--------GGAUUUCAAUAAUUUAGGAUUGCUGU-----------UGAAGAGCAGAGCUUACCUCUGCUUAUUACCUUCGGCCACGAAG ....(((--------((..(((((((............)))-----------))))((((((((.....))))))))....))))).......... ( -21.00) >consensus AAUAUAA________AGAUU_AACCAAUUUAUAUUCUCUAAAUUAGAA_AAAAUAAAAGCAGAGCUUACCUCUGCUU___ACCUUCGCCAACAAAG ........................................................((((.(((.....))).))))................... ( -4.80 = -4.83 + 0.03)
Location | 26,132,163 – 26,132,255 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 72.36 |
Mean single sequence MFE | -18.47 |
Consensus MFE | -12.20 |
Energy contribution | -12.40 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -1.70 |
Structure conservation index | 0.66 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26132163 92 - 27905053 CUUUGUUGGCGAAGGU---AAGCAGAGGUAAGCUCUGCUUUUAUUCUCUUCUAAUUUAGAGAAUAUAAAUUGGUU-AAUAUAUUGGUUAUAAUAUU (((((....)))))..---((((((((.....)))))))).((((((((........))))))))..(((..((.-.....))..)))........ ( -24.60) >DroSec_CAF1 122724 83 - 1 CUUUGUUGGCGAAGGU---AAGCGGAGGUAAGCUCUGCUUUUAUUUU-UCAUAAUUUAGAGAAUAUAAAUUGGUU-AAUCU--------UUAUAUU ....(((((((((((.---((((((((.....))))))))....)))-)).(((((((.......))))))))))-)))..--------....... ( -18.40) >DroSim_CAF1 128619 83 - 1 CUUUGUUGGCGAAGGU---AAGCGGAGGUAAGCUCUGCUUUUAUUUU-UCAUAAUCUAGAGAAUAUAAAUUGGUU-AAUCU--------UUAUAUU ....(((((((((((.---((((((((.....))))))))....)))-))(((.((....)).)))......)))-)))..--------....... ( -16.20) >DroEre_CAF1 131407 84 - 1 CUUUGUUGGCGAAGGU---AAGCAGUGGUAAGCUCAGCUUUUAUUUU-CUCUGAUAUAGAGGAUUUAAAUUGGUUUAAACA--------UUACUUG (((((....))))).(---(((.((((.(((((.(((..((((..((-(((((...)))))))..))))))))))))..))--------)).)))) ( -18.20) >DroYak_CAF1 130173 84 - 1 CUUUGUUGGCGAAGGU---AAGCAGAGGUAAGCUCUGCUUUUAUUUU-CUCUGAUUUAAAAGCUUCGUAUUGAUUUAAACU--------AUAUUUU ((((((..(.((((((---((((((((.....)))))))..))))))-).)..))...))))...................--------....... ( -18.30) >DroAna_CAF1 134692 77 - 1 CUUCGUGGCCGAAGGUAAUAAGCAGAGGUAAGCUCUGCUCUUCA-----------ACAGCAAUCCUAAAUUAUUGAAAUCC--------UCCCAUC ....((((..((((......(((((((.....))))))))))).-----------....((((........))))......--------..)))). ( -15.10) >consensus CUUUGUUGGCGAAGGU___AAGCAGAGGUAAGCUCUGCUUUUAUUUU_UUCUAAUUUAGAGAAUAUAAAUUGGUU_AAUCU________UUAUAUU (((((....))))).....((((((((.....))))))))........................................................ (-12.20 = -12.40 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:01 2006