| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,113,119 – 26,113,217 |
| Length | 98 |
| Max. P | 0.647560 |
| Location | 26,113,119 – 26,113,217 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 84.42 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -20.17 |
| Energy contribution | -20.20 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26113119 98 - 27905053 -------GGAAACCUACAAAAAU-----------GCAUUUAUUUAUUUGCGGCGGCUUGAUCGUAAAAAUAAUUUGCUUUUAUUGCCCAAAAACGGGGCAAAUGAUGUUGCCGCUG-- -------(....)..........-----------(((..........)))((((((...((((((((.....))))).....((((((.......))))))..)))...)))))).-- ( -26.70) >DroPse_CAF1 110907 106 - 1 GGAAAGAGAAAACCUACAAAAAU-----------GCAUUUAUUUAUUUGCGGCGGUUUGAUCGUAAAAAUAAUUUGCUUUUAUUGCCCAA-AACGGGGCAAAUGAUGCUGAUGUUGGG ............((.(((.....-----------(((((...((((((...(((((...)))))..))))))..........((((((..-....))))))..)))))...))).)). ( -23.20) >DroEre_CAF1 112202 100 - 1 G----UAGAAAACCUACAGAAAU-----------GCAUUUAUUUAUUUGCGACGGCUUGAUCGUAAAAAUAAUUUGCUUUUAUUGCCCAA-AACGGGCCAAAUGAUGUUGCCGCUG-- (----(((.....)))).....(-----------(((..........)))).((((...(((((...(((((.......)))))((((..-...))))...)))))...))))...-- ( -22.10) >DroYak_CAF1 109859 100 - 1 G----UAGAAAACCUACAAAAAU-----------GCAUUUAUUUAUUUGCGGCGGCUUGAUCGUAAAAAUAAUUUGCUUUUAUUGCCCAA-AACGGGGCAAAUGAUGUUGCCGCUG-- (----(((.....))))......-----------(((..........)))((((((...((((((((.....))))).....((((((..-....))))))..)))...)))))).-- ( -29.80) >DroAna_CAF1 115958 101 - 1 ----------------GAAAAAUGUAUUUUUGUAGCAUUUAUUUAUUUGCGGCGGUUUGAUCGUAAAAAUAAUUUGCUUUUAUUGCCCAA-AACGGGGCAAAUGAUGUUGCCGCUGUU ----------------...((((((.........))))))........((((((((...((((((((.....))))).....((((((..-....))))))..)))...)))))))). ( -28.50) >DroPer_CAF1 112357 106 - 1 GGAAAGAGAAAACCUACAAAAAU-----------GCAUUUAUUUAUUUGCGGCGGUUUGAUCGUAAAAAUAAUUUGCUUUUAUUGCCCAA-AACGGGGCAAAUGAUGCUGAUGUUGGG ............((.(((.....-----------(((((...((((((...(((((...)))))..))))))..........((((((..-....))))))..)))))...))).)). ( -23.20) >consensus G_____AGAAAACCUACAAAAAU___________GCAUUUAUUUAUUUGCGGCGGCUUGAUCGUAAAAAUAAUUUGCUUUUAUUGCCCAA_AACGGGGCAAAUGAUGUUGCCGCUG__ ..................................(((..........)))((((((...((((((((.....))))).....((((((.......))))))..)))...))))))... (-20.17 = -20.20 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:58 2006