| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,098,773 – 26,098,870 |
| Length | 97 |
| Max. P | 0.683187 |
| Location | 26,098,773 – 26,098,870 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 76.70 |
| Mean single sequence MFE | -25.69 |
| Consensus MFE | -13.98 |
| Energy contribution | -16.38 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26098773 97 + 27905053 UCUCUCUCUCUUACGCUCCUUCUCAUCCACGCUCCUUCGCGG-UUGCGGUUGUUGCAACUCC-AACUCGAACUGCGGCAGCGACGGCGACUGCGACU-AC ....................................((((((-((((.((((((((..(...-..........)..)))))))).))))))))))..-.. ( -31.02) >DroSec_CAF1 90368 93 + 1 UCUCUCUCU----CGCUCCUUCUCAUCCACGCUCCUUCGCGG-UUGCGGUUGUUGCAACUCC-AACUCGAACUGCGGCAGCGACGGCGACUGCGACU-CC .........----.......................((((((-((((.((((((((..(...-..........)..)))))))).))))))))))..-.. ( -31.02) >DroSim_CAF1 92824 93 + 1 UCUCUCUUU----CGCUCCUUCUCAUCCACGCUCCUUCGCGG-UUGCGGUUGUUGCAACUCC-AACUCGAACUGCGGCAGCGACGGCGACUGCGACU-CC .........----.......................((((((-((((.((((((((..(...-..........)..)))))))).))))))))))..-.. ( -31.02) >DroEre_CAF1 97508 82 + 1 CCUCUC----------UCUUUCUCAUCCACGCUCCUUCGCG-------GUUGUUGCAACUCC-AACUCGAACUGCGACGGCGACGGCGACUACGACUUUC ......----------.............((((((.(((((-------(((((((......)-)))...)))))))).))....))))............ ( -19.20) >DroAna_CAF1 100849 82 + 1 UCUCUCUCU----CUC----------UCUCGCUCCAUCGCCGCCUGC---AGCUGCAACUUCAAACUCGAACUUCAACGUCGACGCUGGCAGCGACU-GC .........----...----------..((((((((.(((.((....---.)).))..........((((.(......))))).).))).)))))..-.. ( -16.20) >consensus UCUCUCUCU____CGCUCCUUCUCAUCCACGCUCCUUCGCGG_UUGCGGUUGUUGCAACUCC_AACUCGAACUGCGGCAGCGACGGCGACUGCGACU_CC ....................................((((((.((((.((((((((..(..............)..)))))))).))))))))))..... (-13.98 = -16.38 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:56 2006