Locus 9819

Sequence ID 3R_DroMel_CAF1
Location 26,095,956 – 26,096,053
Length 97
Max. P 0.904774
window15683

overview

Window 3

Location 26,095,956 – 26,096,053
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 84.15
Mean single sequence MFE -18.58
Consensus MFE -13.92
Energy contribution -14.04
Covariance contribution 0.12
Combinations/Pair 1.20
Mean z-score -2.15
Structure conservation index 0.75
SVM decision value 1.04
SVM RNA-class probability 0.904774
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26095956 97 - 27905053
AAAAGAGUAAAAGUGGGAGACACAAGGUGUUUCUUGUUAAGAGUUUUCCACAUCUAAAAACUAUAGUGUUAAAUAAAAUAUUUGUUAAUAUUGUAAA
............(((((((((((((((....)))))).....)))))))))..........(((((((((((.(((.....)))))))))))))).. ( -22.00)
>DroSec_CAF1 87456 97 - 1
AAAAGAGUAAAAGUGGGAGACACAAGGUGUUUCUUGUUAAGAGGUUUCCACAUCUAAAAAUUAUAGUAUUAAAUGAAAUAAUUGUUAAUAUUGUAAC
............(((((((((((((((....))))))......)))))).))).......((((((((((((............)))))))))))). ( -18.10)
>DroSim_CAF1 89911 87 - 1
A-AAGAGUAAAAGUGGGAGACACAAGGUGUUUCUUGUUAAGAGUUUUCCACAUCUAAAAAUUAUAGUAUUAAAUGAAAUAAUU---------GUAAU
.-..........(((((((((((((((....)))))).....)))))))))........(((((((((((......))).)))---------))))) ( -18.30)
>DroEre_CAF1 94570 92 - 1
AAAAGAGUAAAAGUGGGAGGCACAAGGUGUUUCAUGUUGAGAGUCUUCCACAUCUGAAAAUCAUAGCAUUAAAUGAUAUAAAUGA-----UAUUAAG
............(((((((((.(((.(((...))).)))...)))))))))(((.....(((((........)))))......))-----)...... ( -19.40)
>DroYak_CAF1 92311 97 - 1
CAAAGAGUAAAAGUGGGAGGCACAAGGUGUUUCAUGUUGAGAGUUUUUCACAUCUCAAAAUCAUAGUAUUAAAUGAAAUAAAUGUUUAGAUUAUAAC
....(((.....(((..((((.(((.(((...))).)))...))))..)))..)))......(((((.((((((.........)))))))))))... ( -15.10)
>consensus
AAAAGAGUAAAAGUGGGAGACACAAGGUGUUUCUUGUUAAGAGUUUUCCACAUCUAAAAAUUAUAGUAUUAAAUGAAAUAAUUGUU_A_AUUGUAAC
............(((((((((((((((....)))))).....))))))))).............................................. (-13.92 = -14.04 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:55 2006