Locus 9818

Sequence ID 3R_DroMel_CAF1
Location 26,092,008 – 26,092,105
Length 97
Max. P 0.609960
window15682

overview

Window 2

Location 26,092,008 – 26,092,105
Length 97
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.45
Mean single sequence MFE -21.03
Consensus MFE -10.36
Energy contribution -11.00
Covariance contribution 0.64
Combinations/Pair 1.18
Mean z-score -1.93
Structure conservation index 0.49
SVM decision value 0.16
SVM RNA-class probability 0.609960
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26092008 97 + 27905053
---------CCCUCCCCA--CGGACUCUCCUAUUAUUAGCUAAUAGCCCAACGAGUCGGUUGCCGCCAACUGAUUAGCCAUUGGCGACCACACCCCGUUUUUCGCCAC
---------........(--(((((((..((((((.....))))))......)))))((((((((....((....))....))))))))......))).......... ( -21.40)
>DroSec_CAF1 83418 92 + 1
---------CCCUCCCCU--CGAACUCUCCUAUUAUUAGCUAAUAGCCCAACGAGUCGGUUG---CCAACUGAUUAGCCAUUGGCGACCACACCCUGUU--UCACCAC
---------.......((--((.......((((((.....)))))).....))))..(((((---((((.((......)))))))))))..........--....... ( -20.90)
>DroSim_CAF1 85612 92 + 1
---------CCCUCCCCG--CGCACUCUCCUAUUAUUAGAUAAUAGCCCAAGGAGUUGGCUG---CCAACUGAUUAGCCAUCGGUGACCACACCCCGUU--UCCCCAC
---------..((((..(--.((......(((....)))......)).)..)))).((((((---.........))))))..((((....)))).....--....... ( -16.50)
>DroEre_CAF1 88405 92 + 1
---------CCCUCCCCC--CGGACUCACCUAUUAUUAGCUAAUAGUCCAACGAGUCGGUUG---CCAACUUAUUAGCCAUUGGCAACCACUCCCUCUU--UUCAGCC
---------.........--.(((((...(((....))).....)))))...((((.(((((---((((((....))...)))))))))))))......--....... ( -24.80)
>DroYak_CAF1 88293 97 + 1
-G-----CCCCCACCCCCCGCAGACCCACCUAUUAUUGGCUAAUAGACCAACGAGUCGGUUG---CCAACUGAUUAGCCAUUGGCGAACACUCCCUGUU--UUUACCC
-.-----............((((......((((((.....))))))......((((...(((---((((.((......)))))))))..)))).)))).--....... ( -19.30)
>DroAna_CAF1 93647 100 + 1
AGCCUGGCCCCCUUCGCU--GUUACACUCCUAUUAUUAGCUAAUAGCCAAGCGAGUCGGUUG---CCAACUGAUUAGCCAUUGACGGCCCCUCCCAGUC--AAG-ACC
....((((..((((.(((--((((.....(((....))).))))))).))).)(((((((..---...))))))).))))(((((((......)).)))--)).-... ( -23.30)
>consensus
_________CCCUCCCCC__CGGACUCUCCUAUUAUUAGCUAAUAGCCCAACGAGUCGGUUG___CCAACUGAUUAGCCAUUGGCGACCACACCCUGUU__UCCCCAC
......................................((((((.((......(((((((((....))))))))).)).))))))....................... (-10.36 = -11.00 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:54 2006