Locus 9816

Sequence ID 3R_DroMel_CAF1
Location 26,087,515 – 26,087,607
Length 92
Max. P 0.522695
window15679

overview

Window 9

Location 26,087,515 – 26,087,607
Length 92
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 68.92
Mean single sequence MFE -28.61
Consensus MFE -15.20
Energy contribution -15.04
Covariance contribution -0.16
Combinations/Pair 1.35
Mean z-score -1.51
Structure conservation index 0.53
SVM decision value -0.02
SVM RNA-class probability 0.522695
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26087515 92 + 27905053
CCG-AAGGGCUGGUUCCUCCAACUCCCAGCUCCCAGCAGCUCGGCUCCCCACU-------CCCCCAA-AUCUUCGAGGGCUUCGA-----GUUUCCUUCGGUCGCG
(((-(((((((((...................)))))(((((((..((((...-------.......-......).)))..))))-----))).)))))))..... ( -28.60)
>DroSec_CAF1 78983 90 + 1
CCG-AAGGGCUGGUUCCUCCAACUCCCAGCUCCCAGCAGCACAGCUCCCCACU-------CCCCCAA-AUCUUCGGGGGC--CGA-----GUUUCCUUCGGUCGCG
(((-(((((((((...................))))).....(((((......-------(((((..-......))))).--.))-----))).)))))))..... ( -30.51)
>DroSim_CAF1 80649 75 + 1
CCG-AAGGGCUGGUUCCUCCAACUCCCAGC---------------UCCCCACU-------CCCCCAA-CUCUUCGGGGGC--CGA-----GUUUCCUUCGGUCGCG
(((-(((((((((............)))))---------------........-------(((((..-......))))).--...-----....)))))))..... ( -27.80)
>DroEre_CAF1 83861 75 + 1
ACG-AAGGGCUGGCUGCCCCAACUCCCAGC---------------UCCCCACU-------CCUCCAA-AUCUUCGGGGGC-CCGA-----GUU-GCUUCGGUCGCG
.((-((((((.....))))((((((...((---------------((((....-------.......-......))))))-..))-----)))-).))))...... ( -26.23)
>DroAna_CAF1 89198 100 + 1
UCAAAAGGGCUGGCU-CUCCGUCUCCCAGUACU----GCCUGGGCCCCCCCCUUUUUCCGCCUCUGAGCCCCUGGGAGGC-CCCCCUCUUUUAUGCCUUGGUCGCG
..(((((((..(((.-....))).(((((....----..))))).....)))))))..(((..(..(((....((((((.-...))))))....).))..)..))) ( -29.90)
>consensus
CCG_AAGGGCUGGUUCCUCCAACUCCCAGC_C_______C___GCUCCCCACU_______CCCCCAA_AUCUUCGGGGGC__CGA_____GUUUCCUUCGGUCGCG
(((.(((((((((............)))))..............................(((((.........)))))...............)))))))..... (-15.20 = -15.04 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:52 2006