Locus 9815

Sequence ID 3R_DroMel_CAF1
Location 26,087,204 – 26,087,298
Length 94
Max. P 0.626802
window15678

overview

Window 8

Location 26,087,204 – 26,087,298
Length 94
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 80.90
Mean single sequence MFE -18.04
Consensus MFE -9.86
Energy contribution -10.10
Covariance contribution 0.24
Combinations/Pair 1.10
Mean z-score -1.99
Structure conservation index 0.55
SVM decision value 0.19
SVM RNA-class probability 0.626802
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26087204 94 + 27905053
CACUGGAAACA---GCAUCGCAUUCGCUUCACACCCGCCCCAAUUAACGCAAAAUUGCAGAAGGCUCUACUGCCUGGCAUCCCCCCCUUUUCAGUUC
.((((((((..---.....((....)).........(((.........(((....)))...((((......))))))).........)))))))).. ( -20.20)
>DroSec_CAF1 78676 88 + 1
CACUGGAAACA---GCAUCCCAUUCGAUUCACACCCGCCCCAAUUAACGCAAAAUUGCAGAAGGCAGUACUGCCUUGCAUCCCCCUGCCUU------
..(((....))---).................................(((....((((..(((((....)))))))))......)))...------ ( -17.60)
>DroSim_CAF1 80333 94 + 1
CACUGGAAACA---GCAUCCCAUUCGAUUCACACCCGCCCCAAUUAACGCAAAAUUGCAGAAGGCUGUACUGCCUUGCAUCCCCCUCCCUUACCAUC
..(((....))---).....................((..........(((....)))..(((((......)))))))................... ( -15.60)
>DroEre_CAF1 83597 72 + 1
CACUGGAAACA---GCAUCCCAUUCGCUUCACACCCGCCCCAAUUAACGCAAAAUUGCAGCAGGCUGUACUGCCU----------------------
..(((....))---)..........((...(((((.((..(((((.......)))))..)).)).)))...))..---------------------- ( -15.00)
>DroYak_CAF1 83612 89 + 1
CACUGGAAACAGCAGCAUCCCAUUCGCUUCACACCCGCCCCAAUUAACGCAGAAUUGCAGCAGGCUGUACUGCCUGUCUGCCCCAUCGC--------
..(((....)))..((.....((((((.....................)).)))).(((((((((......))))).))))......))-------- ( -21.80)
>consensus
CACUGGAAACA___GCAUCCCAUUCGCUUCACACCCGCCCCAAUUAACGCAAAAUUGCAGAAGGCUGUACUGCCUGGCAUCCCCCUCCCUU______
...((....)).....................................(((....)))..(((((......)))))..................... ( -9.86 = -10.10 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:51 2006