| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,084,795 – 26,084,904 |
| Length | 109 |
| Max. P | 0.508618 |
| Location | 26,084,795 – 26,084,904 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.53 |
| Mean single sequence MFE | -24.76 |
| Consensus MFE | -13.74 |
| Energy contribution | -15.46 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26084795 109 - 27905053 ACUU-UGGUAUUUU--UAUACCAAAUGAAGCAACCUCCUCAGUUUCGGUGUGACCAAAUUAAUGUAUGAAGCUUAGUAUUUUUAUGCUGAAAUACUAAAACAG-GGUAAGUGU- ..((-((((((...--.))))))))....(((....(((..(((((((.....))..((....))..)))))((((((((((......))))))))))....)-))....)))- ( -22.50) >DroSec_CAF1 76246 107 - 1 -CUU-UGGUAUUUA--UAUACCAAGGGAUGCA-CCUCCUCACUUUCUGUGUGCCCAAAUUAAUGUAAAAAGCUUAGUAUUUUUUUGCUGAAAUACUAAAACUG-GGUAAGUGG- -(((-((((((...--.)))))))))....((-(.....(((.....)))((((((.......((.....))((((((((((......))))))))))...))-)))).))).- ( -28.60) >DroSim_CAF1 77900 108 - 1 ACUA-UGGUAUUUU--AAUACCAAGUGUAGGA-ACUCUUCAUUUUAGGUGUGACCAAAUUAAUGUAUAAAGCUUAGUAUUUUUAUGCUGAAAUACUAAAACUG-GGUAAGUGG- (((.-((((.....--.((((((((((.(((.-...))))))))..))))).))))........(((..((.((((((((((......))))))))))..)).-.))))))..- ( -21.00) >DroEre_CAF1 81160 109 - 1 ACUUUUGGUAUUUU--UAUACCAAAUGAAGCA-CCGCUUCAUUUUAGGUGUGACCAAAUCGAUGUAUAAAGCUCAGUAUUUUUAUGCUGAAAUACUAAAACUG-GUAAAAUUG- ..((((((((((.(--(((((((((((((((.-..)))))))))..)))))))...................(((((((....)))))))))))))))))...-.........- ( -28.70) >DroYak_CAF1 80986 112 - 1 ACUU-UGGUAUUCUUUUUAAUCAAAAGCAGCA-CUGUUUCGUUUUAAGUGUGACCAACUUCAUGUAUAAAGCGUAGUAUUUUUGUGCUAAAAUACUAAAACUGUGUAGAUUUGU ..((-((((..........))))))....(((-(.(((((((((((.(..(((......)))..).)))))))(((((((((......))))))))))))).))))........ ( -23.00) >consensus ACUU_UGGUAUUUU__UAUACCAAAUGAAGCA_CCUCUUCAUUUUAGGUGUGACCAAAUUAAUGUAUAAAGCUUAGUAUUUUUAUGCUGAAAUACUAAAACUG_GGUAAGUGG_ .....(((((((((..(((((((((((((((....)))))))))..))))))...........((((((((........)))))))).)))))))))................. (-13.74 = -15.46 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:50 2006