Locus 9813

Sequence ID 3R_DroMel_CAF1
Location 26,082,310 – 26,082,403
Length 93
Max. P 0.928926
window15676

overview

Window 6

Location 26,082,310 – 26,082,403
Length 93
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.58
Mean single sequence MFE -28.08
Consensus MFE -11.25
Energy contribution -11.78
Covariance contribution 0.53
Combinations/Pair 1.25
Mean z-score -3.30
Structure conservation index 0.40
SVM decision value 1.19
SVM RNA-class probability 0.928926
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26082310 93 + 27905053
AUGUUUUUUUC---UCGUCG--CGGCAGCCGAAA---AAUACUCACAAAUUAAAUUAAAUGAAGUGAGUGUGAAAAUGCUG------CAGGUGGGAAAGGG-GG-UGGG
...((((((((---((..(.--..(((((.....---.((((((((..(((......)))...))))))))......))))------).)..)))))))))-).-.... ( -29.60)
>DroSim_CAF1 75443 91 + 1
CUGUUU--UCC---UCGCCG--CGGCAGCCGAAA---AAUACUCACAAAUUAAAUUAAAUGAAGUGAGUGUGAAAAUGCUG------CAGGUGGAAAAGGG-GG-UGGG
((.(((--(((---..(((.--..(((((.....---.((((((((..(((......)))...))))))))......))))------).))))))))).))-..-.... ( -31.50)
>DroEre_CAF1 78754 91 + 1
AUGUUU--UCC---CCGCCG--CGGCAGCCGAAA---AAUACUCCCAAAUUAAAUUAAAUGAAGUGAGUGUGAAAAUGCUG------CAGGUGGAAAAGGG-GG-UGGG
......--(((---((.(((--(.(((((.....---.(((((((...(((......)))...).))))))......))))------)..))))....)))-))-.... ( -29.80)
>DroWil_CAF1 100184 93 + 1
CUUUUA--UU---------U--AGGCAACCGAAA--AAAUAUUCACAAAUUAAAUUAAAUGAAGUGAGUGUGAAAAUGUUAAGAACACCGGUGAAUAUAGG-GGAAAGG
(((((.--((---------(--(....((((...--..((((((((..(((......)))...)))))))).....(((.....))).)))).....))))-.))))). ( -15.90)
>DroYak_CAF1 78485 91 + 1
GUGUUU--UCC---CCGCCG--CCGCAGCCGAAA---AAUACUCACAAAUUAAAUUAAAUGAAGUGGGUGUGAAAAUGCUG------CAGGUGGAAAAGGG-GA-UGGG
......--(((---((.(((--(((((((.....---.((((((((..(((......)))...))))))))......))))------).)))))....)))-))-.... ( -37.00)
>DroAna_CAF1 83261 100 + 1
ACGAUU--UUCCCCUAGUCGGGGGGCAGCCGAAAAAAAAUAUUCACAAAUUAAAUUAAAUGAAGUGAGUGUGAAAAUGCCG------CAGGUGGGAGAUGGAGG-UGGU
.(.(((--(((((((.(.(((.((....))........((((((((..(((......)))...)))))))).......)))------)))).))))))).)...-.... ( -24.70)
>consensus
AUGUUU__UCC___UCGCCG__CGGCAGCCGAAA___AAUACUCACAAAUUAAAUUAAAUGAAGUGAGUGUGAAAAUGCUG______CAGGUGGAAAAGGG_GG_UGGG
..............(((((......((((.........((((((((..(((......)))...))))))))......))))........)))))............... (-11.25 = -11.78 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:49 2006