| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,080,011 – 26,080,109 |
| Length | 98 |
| Max. P | 0.585561 |
| Location | 26,080,011 – 26,080,109 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 74.82 |
| Mean single sequence MFE | -16.30 |
| Consensus MFE | -8.43 |
| Energy contribution | -9.02 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26080011 98 + 27905053 AAAUGAUACGAG-GUGAAUCGAAGUCGGAACACGUGAUUGCCAACAACAUUAGGGGCUCAAGUUUCCAAAAAAAAAAAAAAAUGGAAUAAAAUCCAUCA ....(((.(((.-.....)))..)))((((.((.(((..(((............)))))).))))))..............(((((......))))).. ( -15.90) >DroVir_CAF1 106101 83 + 1 AAAUGAUACG----UGAAUCAAAAUUGAAACACGUGAUUCCCUGCAACAUUAGGGGAUCAAAUUACCCG-------AAAAG----CACCAGCACCACC- .......(((----((..(((....)))..)))))(((((((((......)))))))))..........-------....(----(....))......- ( -20.10) >DroPse_CAF1 76520 89 + 1 AAAUGAUACGAGCGAGAAUCAAACUCGAAACACGUGAUUCCCGGCCACAUUAGGGGAUCAAAUUACCCA-------AAAUAA--GAACAGCAAACAAC- ...........(((((.......)))........((((((((..........)))))))).........-------......--.....)).......- ( -15.50) >DroSec_CAF1 71435 91 + 1 AAAUGAUACGAG-GUGAAUCGAAGUCGCAACACGUGAUUGCCAACAACAUUAGGGGCUCAAGUUUCAAA-------AAAAAAUUGAAUAAAAUCCAUCA ...........(-(((....(.((((((.....))))))..)..........(..((....))..)...-------..................)))). ( -12.50) >DroAna_CAF1 80682 80 + 1 AAAUGAUACGA----AAAUCGAUGUCGGAACACGUGAUUCCCGGCAACAUUAGGGGAUCAAGUUACCCA-------AA--------AUAAUAACCAUGG ....((((((.----....)).))))(((((...((((((((..........)))))))).))).))..-------..--------............. ( -18.30) >DroPer_CAF1 79196 89 + 1 AAAUGAUACGAGCGAGAAUCAAACUCGAAACACGUGAUUCCCGGCGACAUUAGGGGAUCAAAUUACCCA-------AAAUAA--GAACAGCAAACAAC- ...........(((((.......)))........((((((((..........)))))))).........-------......--.....)).......- ( -15.50) >consensus AAAUGAUACGAG_GUGAAUCAAAGUCGAAACACGUGAUUCCCGGCAACAUUAGGGGAUCAAAUUACCCA_______AAAAAA__GAACAAAAACCAUC_ ...((((.(......).)))).............((((((((..........))))))))....................................... ( -8.43 = -9.02 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:46 2006