| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,062,908 – 26,063,001 |
| Length | 93 |
| Max. P | 0.547744 |
| Location | 26,062,908 – 26,063,001 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 79.65 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -18.10 |
| Energy contribution | -18.58 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26062908 93 + 27905053 CAGUCGCGUCCCAGGCAAUUCGCAAUUGCAUAUUUCUGGGGAUAUG-GGUCUACAUUUUGUGUAGAAGUUUAACUAAAAACUACUUGUAGCU-------AC .....((.(((((((.(((..((....))..)))))))))).((..-(((((((((...)))))))(((((......))))).))..)))).-------.. ( -24.60) >DroSec_CAF1 55396 91 + 1 CAGUCGCGUCCCAGGCAAUUCG--AUUGCAUAUUUAUGGGGAUGUG-GGUCUACAUCUUGUGUAGAAGUGUAACUAAAAAGUACUGGUAGCU-------AC ((((((((((((..(((((...--))))).........))))))))-..(((((((...)))))))................))))......-------.. ( -23.70) >DroSim_CAF1 56533 91 + 1 CAGUCGCGUCCCAGGCAAUUCG--AUUGCAUAUUUAUGGGGAUGUG-GGUCUACAUCUUGUGUAGAAGUGUAACUAAAAACAACUUGUAGCU-------AC ....((((((((..(((((...--))))).........))))))))-((.(((((..((((.(((........)))...))))..)))))))-------.. ( -25.80) >DroEre_CAF1 59807 92 + 1 CAGUCGCGUCCCAGGCAUUUCG--AUUGCAUAUUUAUGGGGAUGCGAGGUCUACGUUUUGUGUAGAAGUGUAACU-AAAACUA----CACUGCGGAUCA-- ...(((((((((..(((.....--..))).........)))))))))((((..(((...((((((.((.....))-....)))----))).))))))).-- ( -29.40) >DroYak_CAF1 57538 93 + 1 CAGUCGCGUCCCGCGCAUUUCG--CUUGCAUAUUUACGGGGAUGUGAGGUCUACAUUUUGUGUAGAACUA------AAAACUACUCGCACUUCAGAUUAAC .(((((((...)))(((.....--..)))........((((.((((((.(((((((...)))))))....------.......)))))))))).))))... ( -22.70) >consensus CAGUCGCGUCCCAGGCAAUUCG__AUUGCAUAUUUAUGGGGAUGUG_GGUCUACAUUUUGUGUAGAAGUGUAACUAAAAACUACUUGUAGCU_______AC ....((((((((..(((((.....))))).........))))))))...((((((.....))))))................................... (-18.10 = -18.58 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:37 2006